Detail information of GWHGAAEX013320/evm.TU.scaffold_5.267
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743866184|ref|XP_010905005.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Elaeis guineensis] |
| Swissprot | tr|Q9SVP7|PP307_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g13650 |
| trEMBL | tr|F6HLA9|F6HLA9_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55192.1} |
| trEMBL | tr|F6HLA9|F6HLA9_VITVI | 5.00E-12 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55192.1} |
| TAIR | AT4G13650 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 5794632 | 5798635 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013320
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 252 | 280 | 0.69 |
| PF01535.19 | PPR | 283 | 313 | 5.20E-05 |
| PF01535.19 | PPR | 354 | 380 | 0.041 |
| PF13041.5 | PPR_2 | 384 | 429 | 1.30E-09 |
| PF13041.5 | PPR_2 | 483 | 529 | 8.40E-11 |
| PF01535.19 | PPR | 559 | 578 | 0.84 |
| PF13041.5 | PPR_2 | 584 | 631 | 3.70E-08 |
| PF13041.5 | PPR_2 | 685 | 730 | 1.30E-11 |
| PF13041.5 | PPR_2 | 786 | 833 | 2.30E-10 |
| PF14432.5 | DYW_deaminase | 959 | 1083 | 4.60E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.650 |
| SRR2545915 | Juvenile tuber | 0.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.310 |
| SRR5643514 | five period of Gastrodia elata | 1.720 | |
| SRR5643515 | five period of Gastrodia elata | 1.250 | |
| SRR5643524 | five period of Gastrodia elata | 1.940 | |
| SRR5643525 | five period of Gastrodia elata | 0.360 | |
| SRR5643528 | five period of Gastrodia elata | 0.260 | |
| SRR5643658 | five period of Gastrodia elata | 0.250 | |
| SRR5643659 | five period of Gastrodia elata | 2.070 | |
| SRR5643660 | five period of Gastrodia elata | 2.000 | |
| SRR5643661 | five period of Gastrodia elata | 1.820 | |
| SRR5643662 | five period of Gastrodia elata | 1.600 | |
| SRR5643663 | five period of Gastrodia elata | 1.420 | |
| SRR5643664 | five period of Gastrodia elata | 1.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.360 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.94 |
| Juven | Juvenile tuber | 1.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.26 | |
| Mother_Juven | Mother tuber of Juvenile | 0.35 |