Detail information of GWHGAAEX013326/evm.TU.scaffold_5.275


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|300087476|ref|YP_003757998.1|4.00E-12Isocitrate dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
KOGKOG07844.00E-39Isocitrate dehydrogenase, gamma subunit
nrgi|743806055|ref|XP_010927586.1|9.58E-41PREDICTED: isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial-like [Elaeis guineensis]
Swissprottr|O81796|IDH3_ARATH1.00E-39Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial (Precursor)
trEMBLtr|K7UGC5|K7UGC5_MAIZE2.00E-40Uncharacterized protein {ECO:0000313|EMBL:AFW62821.1, ECO:0000313|EnsemblPlants:GRMZM2G006672_P01}
TAIRAT4G356504.00E-39isocitrate dehydrogenase III

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001660348356042541-
Transcript Sequence

Network for GWHGAAEX013326

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.19Iso_dh12984.70E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00030IDH3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.130
SRR2545915Juvenile tuber9.720
SRP108465SRR5643513five period of Gastrodia elata0.890
SRR5643514five period of Gastrodia elata4.280
SRR5643515five period of Gastrodia elata0.820
SRR5643524five period of Gastrodia elata2.010
SRR5643525five period of Gastrodia elata14.200
SRR5643528five period of Gastrodia elata4.660
SRR5643658five period of Gastrodia elata5.700
SRR5643659five period of Gastrodia elata6.830
SRR5643660five period of Gastrodia elata1.590
SRR5643661five period of Gastrodia elata2.330
SRR5643662five period of Gastrodia elata3.420
SRR5643663five period of Gastrodia elata2.380
SRR5643664five period of Gastrodia elata6.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.800
SRR6049655Rhizomagastrodiae_C368-T10_good_11.540
SRR6049656Rhizomagastrodiae_C368-T07_good_11.090
SRR6049657Rhizomagastrodiae_C368-T07_good_18.560
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_15.790
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_11.790
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_110.440
SRR6049665Rhizomagastrodiae_C368-T10_good_110.440
SRP279888GastroGastrodia elata tuber 0.00
JuvenJuvenile tuber24.15
Mother_GastroMother tuber of Gastrodia elata 60.84
Mother_JuvenMother tuber of Juvenile 32.97