Detail information of GWHGAAEX013337/evm.TU.scaffold_5.295


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG32303.00E-120Vacuolar assembly/sorting protein DID4
nrgi|695020633|ref|XP_009397374.1|2.13E-125PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q0WTY4|VPS2B_ARATH9.00E-121Vacuolar protein sorting-associated protein 2 homolog 2
trEMBLtr|A0A078CQ56|A0A078CQ56_BRANA9.00E-122BnaA01g10570D protein {ECO:0000313|EMBL:CDX78990.1}
TAIRAT5G445603.00E-120SNF7 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001669370276962230-
Transcript Sequence

Network for GWHGAAEX013337

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.20Snf7191851.20E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12191CHMP2A Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034Biological Processvacuolar transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.150
SRR2545915Juvenile tuber2.740
SRP108465SRR5643513five period of Gastrodia elata4.320
SRR5643514five period of Gastrodia elata5.780
SRR5643515five period of Gastrodia elata3.370
SRR5643524five period of Gastrodia elata4.690
SRR5643525five period of Gastrodia elata2.700
SRR5643528five period of Gastrodia elata1.860
SRR5643658five period of Gastrodia elata1.780
SRR5643659five period of Gastrodia elata3.470
SRR5643660five period of Gastrodia elata2.020
SRR5643661five period of Gastrodia elata2.760
SRR5643662five period of Gastrodia elata1.520
SRR5643663five period of Gastrodia elata2.460
SRR5643664five period of Gastrodia elata1.290
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.670
SRR6049655Rhizomagastrodiae_C368-T10_good_15.710
SRR6049656Rhizomagastrodiae_C368-T07_good_12.470
SRR6049657Rhizomagastrodiae_C368-T07_good_12.580
SRR6049658Rhizomagastrodiae_C368-T04_good_11.380
SRR6049659Rhizomagastrodiae_C368-T04_good_10.430
SRR6049660Rhizomagastrodiae_C368-T01_good_11.470
SRR6049661Rhizomagastrodiae_C368-T04_good_12.970
SRR6049662Rhizomagastrodiae_C368-T01_good_15.420
SRR6049663Rhizomagastrodiae_C368-T01_good_12.140
SRR6049664Rhizomagastrodiae_C368-T10_good_13.580
SRR6049665Rhizomagastrodiae_C368-T10_good_13.580
SRP279888GastroGastrodia elata tuber 2.00
JuvenJuvenile tuber1.92
Mother_GastroMother tuber of Gastrodia elata 0.76
Mother_JuvenMother tuber of Juvenile 0.91