Detail information of GWHGAAEX013340/evm.TU.scaffold_5.305


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16772.00E-77CCCH-type Zn-finger protein
nrgi|672130276|ref|XP_008788666.1|1.07E-140PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X2 [Phoenix dactylifera]
Swissprottr|Q84UQ3|C3H56_ORYSJ4.00E-112Zinc finger CCCH domain-containing protein 56
trEMBLtr|K4C8Z2|K4C8Z2_SOLLC2.00E-118Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g072720.2.1}
TAIRAT1G32360_12.00E-77Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001678570167875692+
Transcript Sequence

Network for GWHGAAEX013340

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.23zf-CCCH1051290.00029
PF00642.23zf-CCCH2382632.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.000
SRR2545915Juvenile tuber15.720
SRP108465SRR5643513five period of Gastrodia elata9.620
SRR5643514five period of Gastrodia elata8.940
SRR5643515five period of Gastrodia elata8.850
SRR5643524five period of Gastrodia elata8.860
SRR5643525five period of Gastrodia elata9.560
SRR5643528five period of Gastrodia elata9.620
SRR5643658five period of Gastrodia elata12.720
SRR5643659five period of Gastrodia elata12.570
SRR5643660five period of Gastrodia elata10.970
SRR5643661five period of Gastrodia elata11.910
SRR5643662five period of Gastrodia elata12.900
SRR5643663five period of Gastrodia elata13.060
SRR5643664five period of Gastrodia elata13.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.020
SRR6049655Rhizomagastrodiae_C368-T10_good_16.160
SRR6049656Rhizomagastrodiae_C368-T07_good_110.420
SRR6049657Rhizomagastrodiae_C368-T07_good_111.390
SRR6049658Rhizomagastrodiae_C368-T04_good_19.930
SRR6049659Rhizomagastrodiae_C368-T04_good_112.950
SRR6049660Rhizomagastrodiae_C368-T01_good_110.220
SRR6049661Rhizomagastrodiae_C368-T04_good_112.130
SRR6049662Rhizomagastrodiae_C368-T01_good_19.110
SRR6049663Rhizomagastrodiae_C368-T01_good_111.590
SRR6049664Rhizomagastrodiae_C368-T10_good_19.710
SRR6049665Rhizomagastrodiae_C368-T10_good_19.710
SRP279888GastroGastrodia elata tuber 10.00
JuvenJuvenile tuber6.81
Mother_GastroMother tuber of Gastrodia elata 9.31
Mother_JuvenMother tuber of Juvenile 5.14