Gene detail

Detail information of GWHGAAEX013347/evm.TU.scaffold_5.315

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|334145937\|ref\|YP_004508864.1\|	3.00E-09	leucine-rich protein [Porphyromonas gingivalis TDC60]
KOG	KOG0531	0	Protein phosphatase 1, regulatory subunit, and related proteins
nr	gi\|672141276\|ref\|XP_008794463.1\|	0	PREDICTED: 187-kDa microtubule-associated protein AIR9 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|F4IIU4\|AIR9_ARATH	0	187-kDa microtubule-associated protein AIR9
trEMBL	tr\|M0U3L9\|M0U3L9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P26120_001}
TAIR	AT2G34680	0	Outer arm dynein light chain 1 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	8411014	8501923	-

Transcript Sequence
>GWHTAAEX013347 CCTTAAACGGGAATTTTTAAAACTGAAACTTTACTTAATTTTTTTATTTTAAATTATTTCCTTTTTTTTCCCCTCTTTAAATTTCAGTGTTCTTAGAACAGTCAGGCTGCACCAAGAGTGATATTCTTTTTCAGGATAGTCATTTCTGTAGGGCAATGTGGGGTTTCATCTTGTGAAGTGTTTTTATGCGTTGTTTTGATTCTCTGCTGTCTGTAATGTGTGGATTACGCGAGATATACTTTGCTACTTTCGTCGCTGAAAATTCAGTTTTCTCGTTAAATATACTATTTGCTAGCCTGACTTGGTTCTTCTGTGGATCTAGTCTTATAAAATGAGTGTGGAGTGGAATGTAGTCTGATTTCTTGGGAGATCCTTGATGCTGGCTTCCATCCTATAGATTCGGGATTAAAGCGGAGTGGAGCAGCTGCAGATTTGCAGAAATGGATTCTAGTTTTATTAAATCTCATTCCTTGGCTCAAGAAAAGCTCTCTCCGTCCGCTTCTTCATTGGATTCCGCCAGGAAAGCCTTGAAATTAGTTAAATCAGGTGGGGCTGCAACAGCTGGGGAAGCTACTGGACTCCGTTCATCTGCAGGGAAGAAGTCTGAAGGAAACGGAACTGCAATGGATTCTATTTGGCCATATAAATCCACTCTTATGAAACCAACTTTGAGCTCTAGCGCTGCTTCCTTGCAGCGGAGAAATAGCACTGGAAACCTTTCTAAAAAGCACGTTGTCAAGGACTTAAATCGTCCTTCTGGTGATGGTAAAAAACTTTTTTGTCCAGTGCTGGGCTCTGCAAAGGAAAGTAGTACTGAAAGAAAGCAGCCTTCACTGCCTGCAGGCAGCTCAAAGGGTTCCACATCAGTGGCATCTCCAAATGGAAAAAAAACTTCTCCAATTCCGCGCTTGCTTTCAAAGTCTTATAATGGTAAGGCGGATCGTATGGAAAATTCCGGAGTACAATCATCAGAGCGATTCTCTTCTTCCAAGAGCGTATCTTCATCTTCTTTGGAAAATTCTGATGGTCACAGCAGGCTTAAAAAAGCAACTTCAGATTATTCATTTTCTTCACGATCACCATCAGTTACAAGTAGCATAAAAATGGGCTCACATTTATTATCCGTTGATAGAATTTCTTCACTCCCTAGCAAGAAAAAAGCTCAGCCAACTGCTGAAAGCAGTGATTCTCATTTCATGATGCTACCTCAGGTTGATGTTAAAGCAAAGGATGACCTGCGTTTAGATCGAAGAGGGCATAGAATTCGTAGTCTTGGTGCCCTTGGATTGAATCTAACACCAACTTTGGAGTTTGTTTATCTCAGGGATAATTTAATTTCATCTGTGGAGGGTGTTGAAATATTGACCCGGGTGAAGGTTCTTGATCTAAGCTTCAACGATTTCAAAGCACCTGGTTTTGAGCCTCTTAGTAAATGCAAATCCCTCCAGCAACTTTACCTTGCTGGCAATCAAATTACATCTCTTGCAAGCCTTCCTGAACTTCCTAGTTTAGAGTTTCTCTCTGTAGCTCAGAACAAACTTAAATCACTTTCTATGGCAACTCAGCCTCGGTTACAGGTTTTAGCAGCCAGCAAAAATAAAATATCAAGTTTTAAAGGGTTTCCACATTTACCTAATCTTGAGCATCTGAGGCTGGAAGAAAATCCTATACTACGATTACTCCATGTGGAAGCTGCTTCTATATTGCTTGTTGGCCCAACATTAAAGAAATTCAATGATCGAGATTTGTCTCCCAGGGAACTAGCGGCTGCAAAATCATATCCAGCTAATGCATCATTTTGCATTAGAGATGGTTGGCAATTTGACCGTCCAGAGCTGGCTGCTGAATCAACCTTTTCTTTTCTTGTTGAGAACTGGAGGGAACACTTACCCCCTGGTTTCATGGTTAAGGAAGCTTTTGTTGACCAGCCATTTGAAGATGATATTTGTCGTTGTCATTTCTCATTTGTTAATCTGAATGGTGATCTTGAGTTGAATCTTAAATATCAGTGGTTTGTTGGCGATAGAACTCCAACTAACTTTGAGGTCATTGCTGATGCTGTTGAGAAGGCATACCGGCCTAAGCATGAAAATGTTGGAAAGTTCTTAAAGGTTGAATGCACTCCAATATTACACGAGACAGAGTATCCTTCAATTTTTGCTATTTCGGCACCTGTTTCTCTAGGAACTGGATATCCAAAAGTATTAGATTTAAATGTGCATGGTGAACTTATTGAGGGAAATGTGATCAGGGGTAATGCTGAGGTTGCATGGTGTGGAGGCACACCAGGGAAGTGTGTTGCAAGCTGGTTGCGACGTAAATGGAACAGCAGTCCGGTAGTAATTGCTGGGGCAGAAGATGAAGCTTACCTTTTGACTTCAGATGATATTGGTTCAAGCTTGGTTTTCATGTATATTCCCGTGACAACTGAAGGTACAAAGGGGGAACCGCAGTATGCCATGACAGATTATATAAAAGCAGCTGCGCCTTCAGTCAGTAACGTAAGAATTTTGGGTGATGCTGTTGAGGGAAATACAGTCATTGGTGCTGGAGAATATTTCGGTGGGATAGAAGGTCCAAGCAAGTTTGAATGGTTGCGAGAAGAAAATGAAACTGGTGTTCTCACATTAGTTTCATCCGGTTCTTCTGAGTATCTCTTGACAAAGGAAGATGTAGGGCGACGGCTCACATTTGTTTATTTTCCCATTAATTTTGAAGGCCAGGAGGGAGAATCTGTATCCATTATGTCTCAGATAGTGAAAAAAGCTCCACCAAAGGTAACCACTTTGAAGATCATTGGGGATTTGAGGGAAGGGAGTAAATTAACTGCTACAGCCACAGTTATCGGTGGAACTGAGGGATCTTGTAGGGTTCAATGGTTTCAAACAAATTCTTCTCAGTTTGAGGGTGAAAATAGTCTTGAAGCGATTAGTTCCTCAAAAATTGCAAAGACTTTTCGCATTCCACTTGGTGCTGTGGGAAACTACATTGTTTTAAAATTTATCCCTGTTGCTACTAATGGAGAAACTGGTGAAACAGCATTTGTTGTATCTGAGAAAGTCATTGAAAGTCTTCCGCCAAGCCTTAATTTTCTCTCAATTACTGGTGATTACTGTGAAGGAGAACTGTTAACAGCGTCATATGGTTATATTGGTGGCCACGAGGGAAAAAGTTTATACAGTTGGTATCTTCACAATGCTTATGGTAGTACTGGTATATTAATACCTGAAGCATCAGATTTTCTACAATATTGCATTACAAAGGATTGCATTGGCAAATTTATTTCGTTCAAATGCACGCCAGCTCGTGATGATGGTGTTTTTGGTGAAGCTAGAACCTATTGGGCACCTGTACAAGCTCGCCCAGGAAGCCCTAGGTTACTTTCCTTGCATATAGTTGGTAAAGGTGTTGAAGGAGCCACTCTACATGCTGAAAAAAAATATTGGGGAGGTGAAGAGGGAAATTCAATTTATCATTGGTTCTTGACGAGTCCTGATGGCACTGCAACTGAAATAGAAGGTGCTAAATTTTCTTCCTATAAGGTAACCTATGCGGATATTGGTTTTGCTGTATCAGTTTCATGTGAACCTATTAGAAACGATTGCACTCGTGGTCCCACAGTGACTTCAGAACTTCTTGGTCCAATTATTCCTGGTCCACCAAGTTGCCATTCACTTGAATTTCTTGGGTCACTGGTTGAGGGAAACCGCATTAGTTTTGTTGCTGCCTATAGTGGAGGTCAAAAGGGAAGCTGCATTCATGAATGGTTTAGGTTAATGGAAAACAATATGAAGGAAAAATTAACTGATGATGAGTTTCTGAATTTGACATTGGAGGATCTGGGAAGATGCGTTGAGCTTGTGTTTACACCTGTCCGTGAAGATGGCTTAGTAGGGCCCAAAATGAGCATCATTTCAAGCATAGTTGCCCCTGCAGATCCCATTGGTATTGAGCTTGTTATTCCAGACTGCCAAGAGGATGAGGAGATCATTCCTTTTAAATCTTATTTTGGTGGAAAGGAAGGTAACGGGCAGTATGTTTGGTATAGAGCAAGGTGTAAGCCTGTTGAACCAAACTTGCTCGACGTGTCTAATGCATCCAAGAACTTTGTAGTTGTTGGAGAAAATTTGGTGTATACGCCCACACTTGAAGACGTTGGTTCTTATTTGGTGCTATGTTGGATGCCTACACGTGATGATGGGAAACAAGGTTCTTCTGTTATTGCAGTTAGTAGCAAACCTGTCATGGCAGCACTACCGGCTGTTTTGAATGTATGCATAAAGTTTCTAGGCTCACATATCTATGAAGGTGAAGGTCAATATTATGGAGGATTTGAGGGGTCAAGCTTATTTAGCTGGTACAGGCAAAGTAGTGATGGAACTATGGTTCTCATACCAGAAGCTACTTCCACCAATTATAAAGCTAAAGATCCAGATTACAATTGCCGTTTGTTATTTGGGTATACTCCTGTTCGTTTAGACTCAGCTATTGGAGACCTTGTACTGTCAAAAGCATCCAACGTTATACTTCCAGAACTTCCCAAAATTGAGATGCTTCATTTCAATGGAAAGGGAGAAGAAGGAGAAACACTTACAGCTGTTGAAGTAATACCAAAAACTGAAAACCAAAAATATGTTTGGAGCAAGTACAAAAAAGATGTTAAACATCAATGGTTTTGTTCGGCAAGGAAGGGGGATCATCAGTATTTTGAGGTGCTTCCCTCACAACATTCTTGCTCGTATAGGGTGCGCTTTGAGGATATTGGTCATTGCCTGAAATGTGAGTCCACTGTAGTAGACGTATTTGGAAGATTAAGTGAAACTGTCTCAGCAGAGACTTCTCCAATTTTGCCAGGAATGCCTAAAATTGGTAAGCTTGAGATTGAAGGAAGAGGTTTCCATACGAACTTATACGCTGTTCGAGGAGTATATAATGGAGGGAAAGAAGGAAATAGCAAAATTCAGTGGCTTAGGTCCATGGTTGGAAGCCCTGACCTTATATCTATACCTGGAGAGGTAGGGCGTATGTATGAAGCTAATGTTGATGATGTCGGATACAGGCTTGTTGCACTATATACCCCAATTCGTGATGATGGGGTGGAGGGAGAGCCGATGTCTACCTCAACAGAGCCCGTTGCAGTTGAGCCCGATGTATACAGAGAAGTGAAGCAGAAGCTTGAAATCGGATCAGTAAAATTTGAGACATTGATCGACAAAGACAAGAAGGTTCCGGGTGTGGGAAATCTTGAGAGAAGAATCTTAGAAGTCAGCAGGAAAAGGATCAAAGTTGTTAAGCCTGGTTCCAAGACTTCCTTCCCTACCACTGAAATTCGTGGAACATATGCTCCACCCTTTCATGTAGAGCTGAACAGGAATGATCAGCACCGCTTCAAGGTTGTGGTCGATGGCGAGAATGAAGTTGATCTGATGGTGCAAACTCGGCATGCGAGGGACGTCATCGTTCTTGTTATCAGAGGGCTCGCCCAAAAGTTCAACAGCACCTCCCTCAATTGCTTGCTCAAAGTAGATGATTGAGAAACCCTACAGCTTCAACATGTTTGCCATGGACTTTTTTTTTGCTGAATGATGTGTTGTATTTCTCATGACATTTTACAACTATTATGTGATGTTTATTGTACTTATATTTCATGAAATTACAAGGTTTTTATAAAACAAAAAAAAAGAACTGCCTAACTGTGCCTTAAAAGAAGTTACAGCCA

Network for GWHGAAEX013347

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX013347
MDSSFIKSHSLAQEKLSPSASSLDSARKALKLVKSGGAATAGEATGLRSSAGKKSEGNGTAMDSIWPYKSTLMKPTLSSSAASLQRRNSTGNLSKKHVVKDLNRPSGDGKKLFCPVLGSAKESSTERKQPSLPAGSSKGSTSVASPNGKKTSPIPRLLSKSYNGKADRMENSGVQSSERFSSSKSVSSSSLENSDGHSRLKKATSDYSFSSRSPSVTSSIKMGSHLLSVDRISSLPSKKKAQPTAESSDSHFMMLPQVDVKAKDDLRLDRRGHRIRSLGALGLNLTPTLEFVYLRDNLISSVEGVEILTRVKVLDLSFNDFKAPGFEPLSKCKSLQQLYLAGNQITSLASLPELPSLEFLSVAQNKLKSLSMATQPRLQVLAASKNKISSFKGFPHLPNLEHLRLEENPILRLLHVEAASILLVGPTLKKFNDRDLSPRELAAAKSYPANASFCIRDGWQFDRPELAAESTFSFLVENWREHLPPGFMVKEAFVDQPFEDDICRCHFSFVNLNGDLELNLKYQWFVGDRTPTNFEVIADAVEKAYRPKHENVGKFLKVECTPILHETEYPSIFAISAPVSLGTGYPKVLDLNVHGELIEGNVIRGNAEVAWCGGTPGKCVASWLRRKWNSSPVVIAGAEDEAYLLTSDDIGSSLVFMYIPVTTEGTKGEPQYAMTDYIKAAAPSVSNVRILGDAVEGNTVIGAGEYFGGIEGPSKFEWLREENETGVLTLVSSGSSEYLLTKEDVGRRLTFVYFPINFEGQEGESVSIMSQIVKKAPPKVTTLKIIGDLREGSKLTATATVIGGTEGSCRVQWFQTNSSQFEGENSLEAISSSKIAKTFRIPLGAVGNYIVLKFIPVATNGETGETAFVVSEKVIESLPPSLNFLSITGDYCEGELLTASYGYIGGHEGKSLYSWYLHNAYGSTGILIPEASDFLQYCITKDCIGKFISFKCTPARDDGVFGEARTYWAPVQARPGSPRLLSLHIVGKGVEGATLHAEKKYWGGEEGNSIYHWFLTSPDGTATEIEGAKFSSYKVTYADIGFAVSVSCEPIRNDCTRGPTVTSELLGPIIPGPPSCHSLEFLGSLVEGNRISFVAAYSGGQKGSCIHEWFRLMENNMKEKLTDDEFLNLTLEDLGRCVELVFTPVREDGLVGPKMSIISSIVAPADPIGIELVIPDCQEDEEIIPFKSYFGGKEGNGQYVWYRARCKPVEPNLLDVSNASKNFVVVGENLVYTPTLEDVGSYLVLCWMPTRDDGKQGSSVIAVSSKPVMAALPAVLNVCIKFLGSHIYEGEGQYYGGFEGSSLFSWYRQSSDGTMVLIPEATSTNYKAKDPDYNCRLLFGYTPVRLDSAIGDLVLSKASNVILPELPKIEMLHFNGKGEEGETLTAVEVIPKTENQKYVWSKYKKDVKHQWFCSARKGDHQYFEVLPSQHSCSYRVRFEDIGHCLKCESTVVDVFGRLSETVSAETSPILPGMPKIGKLEIEGRGFHTNLYAVRGVYNGGKEGNSKIQWLRSMVGSPDLISIPGEVGRMYEANVDDVGYRLVALYTPIRDDGVEGEPMSTSTEPVAVEPDVYREVKQKLEIGSVKFETLIDKDKKVPGVGNLERRILEVSRKRIKVVKPGSKTSFPTTEIRGTYAPPFHVELNRNDQHRFKVVVDGENEVDLMVQTRHARDVIVLVIRGLAQKFNSTSLNCLLKVDD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.090
SRP064423	SRR2545915	Juvenile tuber	36.190
SRP108465	SRR5643513	five period of Gastrodia elata	16.780
	SRR5643514	five period of Gastrodia elata	17.780
	SRR5643515	five period of Gastrodia elata	15.390
	SRR5643524	five period of Gastrodia elata	14.720
	SRR5643525	five period of Gastrodia elata	21.210
	SRR5643528	five period of Gastrodia elata	15.120
	SRR5643658	five period of Gastrodia elata	26.190
	SRR5643659	five period of Gastrodia elata	13.970
	SRR5643660	five period of Gastrodia elata	16.680
	SRR5643661	five period of Gastrodia elata	12.480
	SRR5643662	five period of Gastrodia elata	26.360
	SRR5643663	five period of Gastrodia elata	28.270
	SRR5643664	five period of Gastrodia elata	27.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.380
SRP279888	Gastro	Gastrodia elata tuber	20.72
	Juven	Juvenile tuber	17.99
	Mother_Gastro	Mother tuber of Gastrodia elata	6.78
	Mother_Juven	Mother tuber of Juvenile	11.15