Detail information of GWHGAAEX013352/evm.TU.scaffold_5.322


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30367.00E-150Protein involved in cell differentiation/sexual development
nrgi|743792445|ref|XP_010923683.1|4.13E-178PREDICTED: cell differentiation protein RCD1 homolog isoform X2 [Elaeis guineensis]
trEMBLtr|M0RGH0|M0RGH0_MUSAM3.00E-169Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P08440_001}
TAIRAT3G208007.00E-150Cell differentiation, Rcd1-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001687325118785059-
Transcript Sequence

Network for GWHGAAEX013352

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04078.12Rcd1483083.30E-104
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyRcd1-like

KEGG pathway

KO Enzyme pathway mapID
K12606RCD1, CNOT9, CAF40 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms88.840
SRR2545915Juvenile tuber93.390
SRP108465SRR5643513five period of Gastrodia elata50.650
SRR5643514five period of Gastrodia elata48.260
SRR5643515five period of Gastrodia elata48.030
SRR5643524five period of Gastrodia elata44.520
SRR5643525five period of Gastrodia elata123.780
SRR5643528five period of Gastrodia elata106.880
SRR5643658five period of Gastrodia elata136.540
SRR5643659five period of Gastrodia elata50.920
SRR5643660five period of Gastrodia elata50.070
SRR5643661five period of Gastrodia elata54.290
SRR5643662five period of Gastrodia elata54.310
SRR5643663five period of Gastrodia elata54.770
SRR5643664five period of Gastrodia elata54.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_168.060
SRR6049655Rhizomagastrodiae_C368-T10_good_1122.990
SRR6049656Rhizomagastrodiae_C368-T07_good_178.260
SRR6049657Rhizomagastrodiae_C368-T07_good_163.620
SRR6049658Rhizomagastrodiae_C368-T04_good_166.700
SRR6049659Rhizomagastrodiae_C368-T04_good_150.240
SRR6049660Rhizomagastrodiae_C368-T01_good_165.400
SRR6049661Rhizomagastrodiae_C368-T04_good_163.360
SRR6049662Rhizomagastrodiae_C368-T01_good_151.850
SRR6049663Rhizomagastrodiae_C368-T01_good_159.710
SRR6049664Rhizomagastrodiae_C368-T10_good_160.230
SRR6049665Rhizomagastrodiae_C368-T10_good_160.230
SRP279888GastroGastrodia elata tuber 87.46
JuvenJuvenile tuber77.39
Mother_GastroMother tuber of Gastrodia elata 44.13
Mother_JuvenMother tuber of Juvenile 42.62