Gene detail

Detail information of GWHGAAEX013354/evm.TU.scaffold_5.325

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|260597756\|ref\|YP_003210327.1\|	4.00E-29	hypothetical protein CTU_19640 [Cronobacter turicensis z3032]
KOG	KOG1329	0	Phospholipase D1
nr	gi\|672143791\|ref\|XP_008795779.1\|	0	PREDICTED: phospholipase D p1-like [Phoenix dactylifera]
Swissprot	tr\|Q9LRZ5\|PLDP1_ARATH	0	Phospholipase D p1
trEMBL	tr\|W1P6P8\|W1P6P8_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN03344.1}
TAIR	AT3G05630	0	phospholipase D P2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000016	9011301	9093730	+

Transcript Sequence
>GWHTAAEX013354 GAAACTGCTTTATCGAGCACCCTTCTCACGATCTAATTTTATCGTATTTGAAATGTCCGCCTCGCCATCGCGCTCTCTCTCTCCTCTCAATTTTCGAAGCCCTGCAGCAGACACAAAAACTTTGACTGGGGAGCCGAATTTACCTGGGAACACCATCATAACACAGACTACATGACGAATCAGTCGGGGGACCACCGCTACGTGCAGATGCGGGCGGATCCGATAGCATCGTCCTCGCAGTTGCTTCGGCTGGATGTTGCATCACACCCGGCCTGGATTTTTGACGAATTGCCTAAAGCTAAAATCATCTCGGTCTCACGGCCGGACGCCAGCGATATTACCCCCATGCTTCTTTCCTACACCATCGAGTTACAGTACAAGCAGTTTAAATGGACTCTGCTGAAGAAAGCATCACAAGTCGTTTATCTACATTTTGCATTGAAAAAACGTGCATTTGTTGAAGAACTCCATGAGAAACAAGAGCAGGTGAAAGAATGGGTTCAAAATCTTGGGCTAGGGGAAGCTTCTGCAGTTGTGCAAGATGATGATGATGCAGATGATGATGCAGTTCAAGTGCAGCGTGAAGATAACATATCAGCAAAAAATAGAGATGTTCCCTCTAGAGCTGCTTTGCCAATCATTCGACCATCACTTGGAAGACAACAATCCATATCTATCACGGCCAAGGTAGCCATGCAAGGTTATTTGAATCATTTTCTTGGAAACATGGACATCGTAAACTCTCTAGAGGTTTGCAAGTTTTTAGAGGTCTCACGGTTATCCTTTTTGCCAGAGTATGGACCTAAGCTTAAAGAAGACTATGTTTCTGTCAAACATTTGCCAAGGATTCCAAAATGTGAGCATGATGACAGCTGTTGTGCATGCAACTTGTTTAATTGTTGCAATGACAACTGGCAAAAGGTTTGGGCAGTTCTTAAACCAGGCTTCTTGGCTTTTCTAGGAGATCCATTTGATACCAAACCGTTGGACATAATTGTCTTTGATGTACTACTTCCTGATGGAAATGAAGAGGGTCGACTTCTCCTAGCTAAAGAGACTAGAGAACCAAATCCCTTGCGGTTTGGATTTACAGTATCTAGTGGAAGTCGAACAATTAGCCTGAGGGTAAAAAGTAATTCTAAAGTCAAAGACTGGCTTGCTGCAATAAATGACGCTGGTCTGAGACCTCCTGAAGGCTGGTGTTATCCTCATCGTTTCGGTTCATTTGCTCCTCCAAGAGGCTTGATTGAAGATGAAAGCCAAGTTCAATGGTTTGTTGATGGCCAGGCAGCATTTGATGCAATTGCTTCTTCCATTGAAGAAGCAAAGTCAGAGATTTTTATAGCTGGTTGGTGGTTGTGCCCTGAGCTTTTTCTTCGACGCCCTTTTCACAATAATGGATTTTCACGACTTGATTCATTGTTGGAGGCTAGGGCTAAGCAAGGTGTTCAGATTTATATCCTCATTTACAAAGAAGTCGCTCTTGCCTTGAAAATCAACAGTGTATACAGTAAACGCAGATTGTTAAACATTCATGAAAATGTGAAAGTTCTACGTTATCCGGATCATTTTTCAACTGGCATTTATTTGTGGTCCCATCATGAGAAAATTTTGATAGTTGATAACCGGGTTTGTTATTTGGGTGGACTTGATTTGTGCTTTGGCCGGTTCGACAACCACAAACATCATGTTGGTGACCATCCTCCTTTAATTTGGCCTGGAAAAGACTATTATAATCCAAGGGAGTCTGAGCCAAATTCATGGGAGGATACTTTAAAGGATGAGGTGGACCGTAGTAAATATCCTCGCATGCCTTGGCATGATGTCCAATGTGCACTTTGGGGGCCACCTTGTAGGGACGTTGCAAGGCACTTTGTACAACGCTGGAATTATGCTAAGAGAAACAAAGCTCTGCATGAAGATGCTATTCCTTTGTTAATGCCGCATCATCATATGGTAATTCCCCATTATATGGGACAAAATGAGGTCATTGATGCTAGTAAACCGCAAGATATTAATCTTGGAGGAGTGAATAAGGAAGAATCATTTTCCCCTCATTCATCATATCAAGACATTCCCTTACTTATGCCTCATGGATCGGATGGACTAGACAAAACTTGTCGAAATCCAAAGATTGAAATAAATCAAAATCTTGCAGAACAACAATATATGGTAAATCAGGGTTCTTCCTTCCCATTTCGGAAGACCAAAGCTGAACGCCTTATTCCAGATATGCAAATGAAAGATTTTGTTGATGATATTGATTCTTATCAAACCCGGGAAAAAGGGAGTCAGGATGGGATTGCACAACATGTTTTTAATATCAATAAAGAGTGGTGGGAAGCACATGAGCGTGCTGATCGGGTAGTTCCTTTGGAGGAAGTTGGACAAGTTGGTCCTCGTACTTCATGCCGCTGTCAGGTCATCAGAAGTGTTGGTCAGTGGTCTGCTGGAACTAGCCAAACAGAAGAAAGCATCCACAATGCATACATTTCGTTAATTGAAAAGGCAGAGCATTTCATTTATATTGAGAATCAGTTTTTTATTTCAGGTCTATCAGGAGATGATTTTATACAAAATCGAATTTTAGAAGCACTGTATAGGCGCATCTTGAGAGCACATAAGGAAAACAAGTGTTTTAGAGTCATTATTGTCATACCCCTCTTACCTGGCTTCCAGGGTGGCATTGATGATAGTGGTGCTGCATCAGTAAGGGCATTGATGCATTGGCAATATCGAACAATTTGTAGAGGACCGAATTCTATATTGCAGAATCTATATGATATAATGGGGACTAAAGCCCTGGAGTACATATCCTTCTATGGTCTTAGATCGTACGGTAGGCTTCATGATAATGGTTATATAGCCACCAATCAGGTTTATGTGCACAGCAAGTTGATGATAATTGATGATCGCATGGTTTTAATTGGATCAGCTAACATAAATGATAGGAGCTTGCTAGGATCTCGAGATTCTGAGATTGGGGTCATCATTGAAGACAAAGAATTTGTTATTTCTACCATGAATGGGAAGTCATGGAGTGCAGGAAAGTTTACTTTTAGTCTACGTCTCTCTTTATGGTCTGAGCATCTCGGACTACGTTGTAACGAGATACCTCTAATCCATGACCCTGTGATTGATGCAACATACAAGGACATCTGGATGGCGATTGCAAAGACAAATACCATGATCTACCAAGAAGTTTTTTCGTGCGTTCCCAATGATCTCATCCACTCCAGGGCTGGTTTTCGGCAAACCACCGCTTACTGGAAGGAAAAGCTCGGACATACCACCATTGATCTTGGCATTGCACCAGAAAAGCTTGAGGCATATCAGAATGGTAATCCTAGATATGATGCATCTTATCCTATGGATAGTCTGCAGTCCGTGAGGGGCCATCTCGTCTCCTTCCCTCTCGATTTCATGCGCCACGAAGATTTGAGGCCGTTCTTCAATGAGAGCGAGTTCTACGCATCTCAAGTATTTCACTAGTTTTCTTATTAAAGTTATTTTTGTTTTAATGCAGTTTTGATTCCTGTTTCTCATATTTTCCTATTTCATTTAAAACTAAATA

Network for GWHGAAEX013354

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00614.21	PLDc	472	499	1.50E-10
PF13091.5	PLDc_2	774	947	8.50E-10

Protein Sequence

>GWHPAAEX013354
MTNQSGDHRYVQMRADPIASSSQLLRLDVASHPAWIFDELPKAKIISVSRPDASDITPMLLSYTIELQYKQFKWTLLKKASQVVYLHFALKKRAFVEELHEKQEQVKEWVQNLGLGEASAVVQDDDDADDDAVQVQREDNISAKNRDVPSRAALPIIRPSLGRQQSISITAKVAMQGYLNHFLGNMDIVNSLEVCKFLEVSRLSFLPEYGPKLKEDYVSVKHLPRIPKCEHDDSCCACNLFNCCNDNWQKVWAVLKPGFLAFLGDPFDTKPLDIIVFDVLLPDGNEEGRLLLAKETREPNPLRFGFTVSSGSRTISLRVKSNSKVKDWLAAINDAGLRPPEGWCYPHRFGSFAPPRGLIEDESQVQWFVDGQAAFDAIASSIEEAKSEIFIAGWWLCPELFLRRPFHNNGFSRLDSLLEARAKQGVQIYILIYKEVALALKINSVYSKRRLLNIHENVKVLRYPDHFSTGIYLWSHHEKILIVDNRVCYLGGLDLCFGRFDNHKHHVGDHPPLIWPGKDYYNPRESEPNSWEDTLKDEVDRSKYPRMPWHDVQCALWGPPCRDVARHFVQRWNYAKRNKALHEDAIPLLMPHHHMVIPHYMGQNEVIDASKPQDINLGGVNKEESFSPHSSYQDIPLLMPHGSDGLDKTCRNPKIEINQNLAEQQYMVNQGSSFPFRKTKAERLIPDMQMKDFVDDIDSYQTREKGSQDGIAQHVFNINKEWWEAHERADRVVPLEEVGQVGPRTSCRCQVIRSVGQWSAGTSQTEESIHNAYISLIEKAEHFIYIENQFFISGLSGDDFIQNRILEALYRRILRAHKENKCFRVIIVIPLLPGFQGGIDDSGAASVRALMHWQYRTICRGPNSILQNLYDIMGTKALEYISFYGLRSYGRLHDNGYIATNQVYVHSKLMIIDDRMVLIGSANINDRSLLGSRDSEIGVIIEDKEFVISTMNGKSWSAGKFTFSLRLSLWSEHLGLRCNEIPLIHDPVIDATYKDIWMAIAKTNTMIYQEVFSCVPNDLIHSRAGFRQTTAYWKEKLGHTTIDLGIAPEKLEAYQNGNPRYDASYPMDSLQSVRGHLVSFPLDFMRHEDLRPFFNESEFYASQVFH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Thyroid hormone signaling pathway	map04919
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0048017	Biological Process	inositol lipid-mediated signaling
GO:0006654	Biological Process	phosphatidic acid biosynthetic process
GO:0004630	Molecular Function	phospholipase D activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.530
SRP064423	SRR2545915	Juvenile tuber	19.100
SRP108465	SRR5643513	five period of Gastrodia elata	10.930
	SRR5643514	five period of Gastrodia elata	13.820
	SRR5643515	five period of Gastrodia elata	10.850
	SRR5643524	five period of Gastrodia elata	12.400
	SRR5643525	five period of Gastrodia elata	11.670
	SRR5643528	five period of Gastrodia elata	10.480
	SRR5643658	five period of Gastrodia elata	10.900
	SRR5643659	five period of Gastrodia elata	10.250
	SRR5643660	five period of Gastrodia elata	11.570
	SRR5643661	five period of Gastrodia elata	9.810
	SRR5643662	five period of Gastrodia elata	11.640
	SRR5643663	five period of Gastrodia elata	10.390
	SRR5643664	five period of Gastrodia elata	11.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.670
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.510
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.690
SRP279888	Gastro	Gastrodia elata tuber	17.99
	Juven	Juvenile tuber	21.43
	Mother_Gastro	Mother tuber of Gastrodia elata	16.47
	Mother_Juven	Mother tuber of Juvenile	22.75