Detail information of GWHGAAEX013356/evm.TU.scaffold_5.330
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479149505|ref|YP_007779934.1| | 1.00E-20 | Serine/threonine protein kinase [Roseburia intestinalis XB6B4] |
| nr | gi|743761920|ref|XP_010905455.1| | 0 | PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X10 [Elaeis guineensis] |
| Swissprot | tr|Q6R2K3|SRF3_ARATH | 0 | Protein STRUBBELIG-RECEPTOR FAMILY 3 (Precursor) |
| trEMBL | tr|J3L8L0|J3L8L0_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB0257G10010.1} |
| TAIR | AT4G03390 | 0 | STRUBBELIG-receptor family 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 9286360 | 9320745 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013356
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 465 | 734 | 1.90E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-V |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.290 |
| SRR2545915 | Juvenile tuber | 13.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.050 |
| SRR5643514 | five period of Gastrodia elata | 13.130 | |
| SRR5643515 | five period of Gastrodia elata | 12.420 | |
| SRR5643524 | five period of Gastrodia elata | 12.560 | |
| SRR5643525 | five period of Gastrodia elata | 8.500 | |
| SRR5643528 | five period of Gastrodia elata | 5.650 | |
| SRR5643658 | five period of Gastrodia elata | 8.500 | |
| SRR5643659 | five period of Gastrodia elata | 19.260 | |
| SRR5643660 | five period of Gastrodia elata | 23.010 | |
| SRR5643661 | five period of Gastrodia elata | 23.000 | |
| SRR5643662 | five period of Gastrodia elata | 18.340 | |
| SRR5643663 | five period of Gastrodia elata | 20.510 | |
| SRR5643664 | five period of Gastrodia elata | 17.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.080 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.790 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.56 |
| Juven | Juvenile tuber | 15.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.51 | |
| Mother_Juven | Mother tuber of Juvenile | 9.57 |