Detail information of GWHGAAEX013359/evm.TU.scaffold_5.334
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|431798421|ref|YP_007225325.1| | 1.00E-54 | pectin methylesterase [Echinicola vietnamensis DSM 17526] |
| nr | gi|695052588|ref|XP_009414355.1| | 0 | PREDICTED: putative pectinesterase/pectinesterase inhibitor 22 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9M9W7|PME22_ARATH | 0 | Pectinesterase 22 (Precursor) |
| trEMBL | tr|A0A067JTW0|A0A067JTW0_JATCU | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT3G05620 | 0 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 9428489 | 9454121 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013359
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 28 | 168 | 7.30E-21 |
| PF01095.18 | Pectinesterase | 203 | 490 | 1.20E-138 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.700 |
| SRR5643514 | five period of Gastrodia elata | 0.520 | |
| SRR5643515 | five period of Gastrodia elata | 0.450 | |
| SRR5643524 | five period of Gastrodia elata | 0.580 | |
| SRR5643525 | five period of Gastrodia elata | 0.260 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.290 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.100 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.20 |
| Juven | Juvenile tuber | 0.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.31 | |
| Mother_Juven | Mother tuber of Juvenile | 0.16 |