Detail information of GWHGAAEX013364/evm.TU.scaffold_5.343


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34303.00E-48Dynein light chain type 1
nrgi|661897133|emb|CDO98845.1|1.02E-51unnamed protein product [Coffea canephora]
Swissprottr|Q39580|DYL1_CHLRE8.00E-42Dynein 8 kDa light chain, flagellar outer arm
trEMBLtr|A0A068TRA9|A0A068TRA9_COFCA4.00E-52Coffea canephora
TAIRAT4G159303.00E-48Dynein light chain type 1 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001697370519783819+
Transcript Sequence

Network for GWHGAAEX013364

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01221.17Dynein_light461287.10E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10418DYNLL Vasopressin-regulated water reabsorption map04962

Gene Ontology

GO term OntologyName
GO:0007017Biological Processmicrotubule-based process
GO:0005875Cellular Componentmicrotubule associated complex
GO:0030286Cellular Componentdynein complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms46.780
SRR2545915Juvenile tuber53.530
SRP108465SRR5643513five period of Gastrodia elata76.580
SRR5643514five period of Gastrodia elata83.450
SRR5643515five period of Gastrodia elata74.240
SRR5643524five period of Gastrodia elata78.320
SRR5643525five period of Gastrodia elata111.500
SRR5643528five period of Gastrodia elata94.610
SRR5643658five period of Gastrodia elata99.060
SRR5643659five period of Gastrodia elata77.720
SRR5643660five period of Gastrodia elata78.730
SRR5643661five period of Gastrodia elata82.460
SRR5643662five period of Gastrodia elata61.170
SRR5643663five period of Gastrodia elata67.080
SRR5643664five period of Gastrodia elata66.200
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_155.210
SRR6049655Rhizomagastrodiae_C368-T10_good_146.440
SRR6049656Rhizomagastrodiae_C368-T07_good_165.110
SRR6049657Rhizomagastrodiae_C368-T07_good_158.350
SRR6049658Rhizomagastrodiae_C368-T04_good_160.920
SRR6049659Rhizomagastrodiae_C368-T04_good_169.240
SRR6049660Rhizomagastrodiae_C368-T01_good_157.550
SRR6049661Rhizomagastrodiae_C368-T04_good_166.550
SRR6049662Rhizomagastrodiae_C368-T01_good_168.560
SRR6049663Rhizomagastrodiae_C368-T01_good_153.400
SRR6049664Rhizomagastrodiae_C368-T10_good_180.740
SRR6049665Rhizomagastrodiae_C368-T10_good_180.740
SRP279888GastroGastrodia elata tuber 62.10
JuvenJuvenile tuber55.80
Mother_GastroMother tuber of Gastrodia elata 24.09
Mother_JuvenMother tuber of Juvenile 30.36