Detail information of GWHGAAEX013365/evm.TU.scaffold_5.344


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|429217361|ref|YP_007175351.1|6.00E-35ribosomal protein S19E (S16A) [Caldisphaera lagunensis DSM 15908]
KOGKOG34113.00E-8340S ribosomal protein S19
nrgi|225423503|ref|XP_002269657.1|4.07E-90PREDICTED: 40S ribosomal protein S19-1 [Vitis vinifera]
Swissprottr|Q9SGA6|RS191_ARATH1.00E-8340S ribosomal protein S19-1
trEMBLtr|A5BGC5|A5BGC5_VITVI2.00E-90Putative uncharacterized protein {ECO:0000313|EMBL:CAN70140.1}
TAIRAT3G020803.00E-83Ribosomal protein S19e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001698033329809648-
Transcript Sequence

Network for GWHGAAEX013365

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01090.18Ribosomal_S19e91433.60E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02966RP-S19e, RPS19 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms180.530
SRR2545915Juvenile tuber236.390
SRP108465SRR5643513five period of Gastrodia elata520.630
SRR5643514five period of Gastrodia elata604.710
SRR5643515five period of Gastrodia elata563.620
SRR5643524five period of Gastrodia elata610.380
SRR5643525five period of Gastrodia elata306.350
SRR5643528five period of Gastrodia elata379.530
SRR5643658five period of Gastrodia elata240.890
SRR5643659five period of Gastrodia elata604.910
SRR5643660five period of Gastrodia elata583.730
SRR5643661five period of Gastrodia elata617.490
SRR5643662five period of Gastrodia elata449.270
SRR5643663five period of Gastrodia elata451.610
SRR5643664five period of Gastrodia elata424.990
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1347.290
SRR6049655Rhizomagastrodiae_C368-T10_good_1395.610
SRR6049656Rhizomagastrodiae_C368-T07_good_1446.100
SRR6049657Rhizomagastrodiae_C368-T07_good_1302.340
SRR6049658Rhizomagastrodiae_C368-T04_good_1323.940
SRR6049659Rhizomagastrodiae_C368-T04_good_1259.270
SRR6049660Rhizomagastrodiae_C368-T01_good_1377.820
SRR6049661Rhizomagastrodiae_C368-T04_good_1347.660
SRR6049662Rhizomagastrodiae_C368-T01_good_1549.380
SRR6049663Rhizomagastrodiae_C368-T01_good_1507.840
SRR6049664Rhizomagastrodiae_C368-T10_good_1605.820
SRR6049665Rhizomagastrodiae_C368-T10_good_1605.820
SRP279888GastroGastrodia elata tuber 526.31
JuvenJuvenile tuber372.47
Mother_GastroMother tuber of Gastrodia elata 230.37
Mother_JuvenMother tuber of Juvenile 243.11