Detail information of GWHGAAEX013367/evm.TU.scaffold_5.349


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17571.00E-75Histone 2A
nrgi|672190378|ref|XP_008775234.1|1.16E-86PREDICTED: probable histone H2A variant 3 [Phoenix dactylifera]
Swissprottr|Q84MP7|H2AV3_ORYSJ7.00E-78Probable histone H2A variant 3
trEMBLtr|M0TTZ5|M0TTZ5_MUSAM4.00E-86Histone H2A {ECO:0000256|RuleBase:RU003556}
TAIRAT3G545601.00E-75histone H2A 11

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001699638269973668-
Transcript Sequence

Network for GWHGAAEX013367

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00125.23Histone191039.40E-20
PF16211.4Histone_H2A_C1041339.30E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11251H2A Necroptosis map04217

Gene Ontology

GO term OntologyName
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0003677Molecular FunctionDNA binding
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.890
SRR2545915Juvenile tuber25.710
SRP108465SRR5643513five period of Gastrodia elata42.900
SRR5643514five period of Gastrodia elata51.410
SRR5643515five period of Gastrodia elata46.490
SRR5643524five period of Gastrodia elata50.450
SRR5643525five period of Gastrodia elata25.600
SRR5643528five period of Gastrodia elata58.440
SRR5643658five period of Gastrodia elata32.540
SRR5643659five period of Gastrodia elata47.030
SRR5643660five period of Gastrodia elata45.620
SRR5643661five period of Gastrodia elata59.060
SRR5643662five period of Gastrodia elata47.720
SRR5643663five period of Gastrodia elata36.030
SRR5643664five period of Gastrodia elata52.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_137.230
SRR6049655Rhizomagastrodiae_C368-T10_good_122.880
SRR6049656Rhizomagastrodiae_C368-T07_good_131.840
SRR6049657Rhizomagastrodiae_C368-T07_good_135.840
SRR6049658Rhizomagastrodiae_C368-T04_good_127.190
SRR6049659Rhizomagastrodiae_C368-T04_good_123.720
SRR6049660Rhizomagastrodiae_C368-T01_good_126.400
SRR6049661Rhizomagastrodiae_C368-T04_good_129.160
SRR6049662Rhizomagastrodiae_C368-T01_good_142.540
SRR6049663Rhizomagastrodiae_C368-T01_good_132.690
SRR6049664Rhizomagastrodiae_C368-T10_good_142.560
SRR6049665Rhizomagastrodiae_C368-T10_good_142.560
SRP279888GastroGastrodia elata tuber 77.88
JuvenJuvenile tuber48.52
Mother_GastroMother tuber of Gastrodia elata 83.14
Mother_JuvenMother tuber of Juvenile 54.29