Detail information of GWHGAAEX013374/evm.TU.scaffold_5.357
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|470181905|ref|YP_007567780.1| | 4.00E-22 | RalF protein, translocated into host cells by the Dot/Icm system [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] |
| KOG | KOG0929 | 0 | Guanine nucleotide exchange factor |
| nr | gi|743761884|ref|XP_010905310.1| | 0 | PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 isoform X2 [Elaeis guineensis] |
| Swissprot | tr|F4IXW2|BIG5_ARATH | 0 | Brefeldin A-inhibited guanine nucleotide-exchange protein 5 |
| trEMBL | tr|M0SSM7|M0SSM7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P27650_001} |
| TAIR | AT3G43300 | 0 | HOPM interactor 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 10611809 | 10688022 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013374
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16213.4 | DCB | 113 | 247 | 2.00E-27 |
| PF12783.6 | Sec7_N | 345 | 496 | 2.60E-37 |
| PF01369.19 | Sec7 | 587 | 768 | 8.80E-61 |
| PF09324.9 | DUF1981 | 1081 | 1163 | 7.20E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0032012 | Biological Process | regulation of ARF protein signal transduction |
| GO:0005086 | Molecular Function | ARF guanyl-nucleotide exchange factor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 95.100 |
| SRR2545915 | Juvenile tuber | 101.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 38.300 |
| SRR5643514 | five period of Gastrodia elata | 43.240 | |
| SRR5643515 | five period of Gastrodia elata | 40.860 | |
| SRR5643524 | five period of Gastrodia elata | 42.340 | |
| SRR5643525 | five period of Gastrodia elata | 29.190 | |
| SRR5643528 | five period of Gastrodia elata | 24.240 | |
| SRR5643658 | five period of Gastrodia elata | 33.300 | |
| SRR5643659 | five period of Gastrodia elata | 48.620 | |
| SRR5643660 | five period of Gastrodia elata | 54.230 | |
| SRR5643661 | five period of Gastrodia elata | 48.370 | |
| SRR5643662 | five period of Gastrodia elata | 49.560 | |
| SRR5643663 | five period of Gastrodia elata | 56.620 | |
| SRR5643664 | five period of Gastrodia elata | 58.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 50.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 55.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 49.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 52.650 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 62.77 |
| Juven | Juvenile tuber | 61.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.64 | |
| Mother_Juven | Mother tuber of Juvenile | 43.85 |