Detail information of GWHGAAEX013378/evm.TU.scaffold_5.368


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|183221259|ref|YP_001839255.1|2.00E-15putative cyclic-nucleotide-gated cation channel [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
KOGKOG04980K+-channel ERG and related proteins, contain PAS/PAC sensor domain
nrgi|672184748|ref|XP_008812641.1|0PREDICTED: cyclic nucleotide-gated ion channel 4 [Phoenix dactylifera]
Swissprottr|Q94AS9|CNGC4_ARATH0Cyclic nucleotide-gated ion channel 4
trEMBLtr|M0RY82|M0RY82_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P08730_001}
TAIRAT5G542500cyclic nucleotide-gated cation channel 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000161130017011432597+
Transcript Sequence

Network for GWHGAAEX013378

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00520.30Ion_trans413652.50E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0006811Biological Procession transport
GO:0005216Molecular Functionion channel activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.440
SRR2545915Juvenile tuber4.100
SRP108465SRR5643513five period of Gastrodia elata14.260
SRR5643514five period of Gastrodia elata45.960
SRR5643515five period of Gastrodia elata23.350
SRR5643524five period of Gastrodia elata30.720
SRR5643525five period of Gastrodia elata7.630
SRR5643528five period of Gastrodia elata13.890
SRR5643658five period of Gastrodia elata9.460
SRR5643659five period of Gastrodia elata7.420
SRR5643660five period of Gastrodia elata6.100
SRR5643661five period of Gastrodia elata6.080
SRR5643662five period of Gastrodia elata5.790
SRR5643663five period of Gastrodia elata10.180
SRR5643664five period of Gastrodia elata5.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_160.150
SRR6049655Rhizomagastrodiae_C368-T10_good_129.570
SRR6049656Rhizomagastrodiae_C368-T07_good_155.120
SRR6049657Rhizomagastrodiae_C368-T07_good_140.430
SRR6049658Rhizomagastrodiae_C368-T04_good_124.930
SRR6049659Rhizomagastrodiae_C368-T04_good_118.960
SRR6049660Rhizomagastrodiae_C368-T01_good_130.860
SRR6049661Rhizomagastrodiae_C368-T04_good_133.090
SRR6049662Rhizomagastrodiae_C368-T01_good_139.720
SRR6049663Rhizomagastrodiae_C368-T01_good_130.930
SRR6049664Rhizomagastrodiae_C368-T10_good_136.350
SRR6049665Rhizomagastrodiae_C368-T10_good_136.350
SRP279888GastroGastrodia elata tuber 5.11
JuvenJuvenile tuber8.65
Mother_GastroMother tuber of Gastrodia elata 2.44
Mother_JuvenMother tuber of Juvenile 1.45