Detail information of GWHGAAEX013380/evm.TU.scaffold_5.372
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|17229337|ref|NP_485885.1| | 2.00E-14 | tRNA (guanine-N(7)-)-methyltransferase [Nostoc sp. PCC 7120] |
| KOG | KOG3115 | 5.00E-128 | Methyltransferase-like protein |
| nr | gi|743813503|ref|XP_010929741.1| | 3.32E-138 | PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Elaeis guineensis] |
| Swissprot | tr|Q67V78|TRMB_ORYSJ | 6.00E-134 | tRNA (guanine-N(7)-)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_03055} |
| trEMBL | tr|M0TJ33|M0TJ33_MUSAM | 7.00E-135 | tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_03055} |
| TAIR | AT5G24840 | 5.00E-128 | tRNA (guanine-N-7) methyltransferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 11700235 | 11706971 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013380
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02390.16 | Methyltransf_4 | 72 | 247 | 2.60E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006400 | Biological Process | tRNA modification |
| GO:0008176 | Molecular Function | tRNA (guanine-N7-)-methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.800 |
| SRR2545915 | Juvenile tuber | 6.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.190 |
| SRR5643514 | five period of Gastrodia elata | 10.920 | |
| SRR5643515 | five period of Gastrodia elata | 9.120 | |
| SRR5643524 | five period of Gastrodia elata | 9.740 | |
| SRR5643525 | five period of Gastrodia elata | 13.180 | |
| SRR5643528 | five period of Gastrodia elata | 12.540 | |
| SRR5643658 | five period of Gastrodia elata | 11.790 | |
| SRR5643659 | five period of Gastrodia elata | 13.840 | |
| SRR5643660 | five period of Gastrodia elata | 14.120 | |
| SRR5643661 | five period of Gastrodia elata | 11.570 | |
| SRR5643662 | five period of Gastrodia elata | 13.010 | |
| SRR5643663 | five period of Gastrodia elata | 11.690 | |
| SRR5643664 | five period of Gastrodia elata | 14.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.880 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.99 |
| Juven | Juvenile tuber | 28.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.13 | |
| Mother_Juven | Mother tuber of Juvenile | 29.69 |