Detail information of GWHGAAEX013385/evm.TU.scaffold_5.386
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307152491|ref|YP_003887875.1| | 6.00E-21 | WD40 repeat-containing protein [Cyanothece sp. PCC 7822] |
| KOG | KOG0310 | 8.00E-157 | Conserved WD40 repeat-containing protein |
| nr | gi|743789316|ref|XP_010922875.1| | 0 | PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Elaeis guineensis] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 8.00E-13 | Protein Mut11 |
| trEMBL | tr|F6HQ31|F6HQ31_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56787.1} |
| TAIR | AT2G47990 | 8.00E-157 | transducin family protein / WD-40 repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 12130556 | 12132106 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013385
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 172 | 208 | 0.012 |
| PF00400.31 | WD40 | 220 | 249 | 0.0023 |
| PF09384.9 | UTP15_C | 368 | 510 | 2.00E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14549 | UTP15 | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006364 | Biological Process | rRNA processing |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005730 | Cellular Component | nucleolus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.410 |
| SRR2545915 | Juvenile tuber | 16.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.820 |
| SRR5643514 | five period of Gastrodia elata | 16.530 | |
| SRR5643515 | five period of Gastrodia elata | 15.380 | |
| SRR5643524 | five period of Gastrodia elata | 15.510 | |
| SRR5643525 | five period of Gastrodia elata | 6.570 | |
| SRR5643528 | five period of Gastrodia elata | 6.540 | |
| SRR5643658 | five period of Gastrodia elata | 3.680 | |
| SRR5643659 | five period of Gastrodia elata | 29.480 | |
| SRR5643660 | five period of Gastrodia elata | 30.080 | |
| SRR5643661 | five period of Gastrodia elata | 34.600 | |
| SRR5643662 | five period of Gastrodia elata | 29.450 | |
| SRR5643663 | five period of Gastrodia elata | 21.950 | |
| SRR5643664 | five period of Gastrodia elata | 20.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.520 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.83 |
| Juven | Juvenile tuber | 20.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.42 | |
| Mother_Juven | Mother tuber of Juvenile | 8.90 |