Detail information of GWHGAAEX013391/evm.TU.scaffold_5.398
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|221633293|ref|YP_002522518.1| | 6.00E-23 | hypothetical protein trd_1313 [Thermomicrobium roseum DSM 5159] |
| nr | gi|743758607|ref|XP_010927742.1| | 0 | PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Elaeis guineensis] |
| Swissprot | tr|O64477|Y2913_ARATH | 0 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (Precursor) |
| trEMBL | tr|F6GXR2|F6GXR2_VITVI | 0 | Serine/threonine-protein kinase {ECO:0000256|PIRNR:PIRNR000641} |
| TAIR | AT2G19130 | 0 | S-locus lectin protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000016 | 12518517 | 12521266 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013391
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01453.23 | B_lectin | 78 | 183 | 6.20E-31 |
| PF00954.19 | S_locus_glycop | 214 | 323 | 2.70E-26 |
| PF08276.10 | PAN_2 | 345 | 404 | 4.40E-15 |
| PF00069.24 | Pkinase | 496 | 692 | 3.30E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_SD-2b |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0048544 | Biological Process | recognition of pollen |
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0004674 | Molecular Function | protein serine/threonine kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.690 |
| SRR2545915 | Juvenile tuber | 25.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.330 |
| SRR5643514 | five period of Gastrodia elata | 18.750 | |
| SRR5643515 | five period of Gastrodia elata | 20.870 | |
| SRR5643524 | five period of Gastrodia elata | 22.560 | |
| SRR5643525 | five period of Gastrodia elata | 9.780 | |
| SRR5643528 | five period of Gastrodia elata | 6.060 | |
| SRR5643658 | five period of Gastrodia elata | 7.060 | |
| SRR5643659 | five period of Gastrodia elata | 23.360 | |
| SRR5643660 | five period of Gastrodia elata | 22.450 | |
| SRR5643661 | five period of Gastrodia elata | 23.650 | |
| SRR5643662 | five period of Gastrodia elata | 21.860 | |
| SRR5643663 | five period of Gastrodia elata | 22.410 | |
| SRR5643664 | five period of Gastrodia elata | 17.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.820 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.83 |
| Juven | Juvenile tuber | 45.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.24 | |
| Mother_Juven | Mother tuber of Juvenile | 27.64 |