Gene detail

Detail information of GWHGAAEX013398/evm.TU.scaffold_50.1

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|543963328\|ref\|YP_008546363.1\|	1.00E-57	DEAD/DEAH box helicase-like protein [Sulfuricella denitrificans skB26]
KOG	KOG0346	0	RNA helicase
nr	gi\|743836741\|ref\|XP_010936191.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Elaeis guineensis]
Swissprot	tr\|Q6ATJ8\|RH16_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 16
trEMBL	tr\|A0A068U290\|A0A068U290_COFCA	0	Coffea canephora
TAIR	AT4G34910	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	24357	53427	+

Transcript Sequence
>GWHTAAEX013398 CTCTCTCAGCCAAAAAAATCCCCTCCTCTCTTCATAAACCCGATTCCTTCTTCTCCCCTTTCGAATTCCAACCGAGAGGCGCCTTCTCCTCCCTCTCTGCGAGCCGGGAGCAGCCGCCAGCTTCCAGTCGAGCCTTCCCTCGAGCCAGCAGCCTTGGTCTCGGCTGGTGGCCGAGAGCAGCCCGCCAACTCGCCGATCCCTCCAGCCGCCAGCCCGACGTCTTACTCTCGGTTGGAGGCCGAGAGCCAGCCCAGCTTCTCTCTAGGCTGGAGGCCGAGAGCCAGCCCTTCTCTCTCGGCTAGAGGCCAAGGGCCAGCAGCCAACTTCTCCTCTCGGCTGGAGGCCAAGAGCCAGCCTGCCAGCCCTTCTCTTTCGGCTAGAGGCCGAGAGCCGCGGCACCACCTCTTCCTTGTTGCTAACCTTATGCCAATTGCTGATCAATGTGTTGTAATTGACATCTCATCCCAATCAATAGACGAGCTTCAAGTTCAAATCACCATAAAGACCACGGTTGCTCCAAGCCACCGAGAGTAGGAGACGCTTAACACCTCTTTTCTTGTACGGGACCGTCACACCTCTGTTCTTTTCTTCCTTCGTCCTCGTCTTCTCCACGCTTGCACTGCAGTCTGGCTCTGCTGAGTCGCCGACTTCCTTGGCTTTATCTACGCCACTCAGCAGCCAACCATGGTGAACCCTTGCAATAAAAAAAGGCAGGGTGAAGAAGAGGATTGTGAGTTGAGCTTCGAGGAGTTAGGTGTGGACCCACGATTGATTCGAGCTCTTTCAAAGAAGAGCATCATGAAACCCACTCCCATCCAGCGTGAATCCATCCCTTTGATCCTGGAGGGAAAAGATGTTGTTGCACGGGCAAAGACCGGCTCTGGGAAGACATTTGCATATCTTCTTCCCCTTCTTCAGAAGCTTTTCTCCGAGAGTGGCGAGCCAAAAAAGTCTGGACCTAGGGTTTTCATACTGTTGCCTACTCGGGAGCTTTGCCGCCAAGTTCATTGTGAGGCCTCTTCTCTTATTGAGTTATGCAGGGTTCAATTGAAGGTTGTGCTACTCTTGAGTGATATGCCAGTAAAGGAGATGATTGTTGCACTATCAGGATCCCCAGAGTTAATCGTATCAACTCCAGCATGTATCTCAACTTGCCTGTCAAAAGGAATCCTGCAGGATTCATCCATTAAAGATTCACTCTCAGTGTTAGTTTTAGATGAGGCTGATCTCCTCCTGTCACATGGATATGAAGACGATTTGAAAAATCTTGTTTTTCATATCCCAAGGTGTTGCCAATGCCTTCTGATGTCTGCCACATCTAGCTCTGACGTTGAGAAACTGAAAAAACTTGCACTCCATAATCCGATAATTTTGACTCTGGCGGAAACAAATCATCTAAAGAATGAAATTATCCCAGCAAATGTCCAACAATTTCTGATTTTGTGCAGTGTCCATGACAAACTGCTTTACATGCTCGCTCTCTTGAAACTTGAACTTGTTCAGAAAAAAGTGCTAATATTTGTCAACTCTATTGACACAGGAATCAGATTGAGATTGTTCTTAGAACAGTTTGGAATAAGGTCTGCTGTCTTAAATGCTGAACTGCCACATAATTCTCGAACACATATACTTGAGGAGTTTAATGCAGGCATATTTGACTATTTAATAGCTACTGATGGCATTAAACAGAAGAATGATCAAAATAGCAAAGAAAAATTGATCAAATCAAAAGGCTCTAAAAAGAATTTCAGACAAAATATGGACTCAGAGTTTGGGGTTGTCAGAGGAATAGACTTCAAAAATGTCTTTACGGTCATTAACTTTGATATGCCTGAAAGTCCTGAAGGCTATGTGCATAGAGTTGGGCGAACTGGAAGAGCGTGCAATACTGGGGCATCTATTTCACTTGTTTCCCCTGAGGATAATAAAATTATTCAGAAAGTTAAACTAATATTAGGTGACAATGGTCTCATGGATAACTCAAGCTATATTACTCCATTTCCTTTGCTTACGGCAAATGCTGTGGAATCTCTACGTTACAGGGCTGAGGATGTGGCCAAAGGTGTGACAAGATTTGCAATTAGGGAATCTCGTGCTCAAGATTTAAGAAATGAAATTATGAACTCTAAAATATTGAAGGCTCATTTTGAAGAGAATCCTAGGGACTTGGATTTACTGAAGCATGACAAGATGTTGAGTAAGAATGCTCCCCCAGCTCATCTTCGTGATGTTCCTGATTACCTTCTTGATCCAATAACTCAAGAGGCAAGCAAGTTAGTTGAGCTCTCTAGAGCTGCTGCAATGGGGTTAGAGAGTCGTAAGAGGTACAATACGTTCAATAAAGGATTCCATAAGTGTAGAGACCCGCTTAAAACCTTCACTGCTAAGGGAAGATCTTATAATATAAAGAAAAGAAAGGAAAGGAATGAAGATGGCAACAGAAAAAGGCAAAGGAATGCCAAGGTTTTAGGTTCATAAGATTTTTTGTTTTATTGGTTGCTTATTAAATCTAGCCACCATTTAATTGTTGTTTAGTGTTTATTTCAAGTTACTTGAAACATATGAATTATGAAATTGTTGGCTGGTTCAATCTATATATAAGGTTAGTGCATTACTGAATTTAATCTAATTTTTCATAAAGAATTTATAGGCAGCAAGTTGTTTTCTTCTTAAATGCAATTATTTTAGAAGTTTTGCTATTGTTTCCCCAAATATAGCATAATGAGAGGCCGATGAGGCAACAATTTTATATAAATGAGACGTATCGCATATATATATATGGGATCTTATAAT

Network for GWHGAAEX013398

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	42	219	4.50E-39
PF00271.30	Helicase_C	258	399	7.50E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.820
SRP064423	SRR2545915	Juvenile tuber	37.660
SRP108465	SRR5643513	five period of Gastrodia elata	46.220
	SRR5643514	five period of Gastrodia elata	45.820
	SRR5643515	five period of Gastrodia elata	44.000
	SRR5643524	five period of Gastrodia elata	47.940
	SRR5643525	five period of Gastrodia elata	34.270
	SRR5643528	five period of Gastrodia elata	39.280
	SRR5643658	five period of Gastrodia elata	41.750
	SRR5643659	five period of Gastrodia elata	45.050
	SRR5643660	five period of Gastrodia elata	41.600
	SRR5643661	five period of Gastrodia elata	40.270
	SRR5643662	five period of Gastrodia elata	43.830
	SRR5643663	five period of Gastrodia elata	39.330
	SRR5643664	five period of Gastrodia elata	35.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.540
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	47.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.880
SRP279888	Gastro	Gastrodia elata tuber	58.65
	Juven	Juvenile tuber	91.62
	Mother_Gastro	Mother tuber of Gastrodia elata	65.32
	Mother_Juven	Mother tuber of Juvenile	81.68