Detail information of GWHGAAEX013401/evm.TU.scaffold_50.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG24013.00E-62Predicted MutS-related protein involved in mismatch repair
nrgi|743816019|ref|XP_010930523.1|1.91E-93PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105051681 [Elaeis guineensis]
trEMBLtr|M0T6H4|M0T6H4_MUSAM1.00E-90Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P12760_001}
TAIRAT5G235203.00E-62smr (Small MutS Related) domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000053110211125068-
Transcript Sequence

Network for GWHGAAEX013401

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08590.9DUF17712122751.90E-11
PF01713.20Smr2833722.80E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.040
SRR2545915Juvenile tuber18.380
SRP108465SRR5643513five period of Gastrodia elata19.020
SRR5643514five period of Gastrodia elata14.760
SRR5643515five period of Gastrodia elata18.520
SRR5643524five period of Gastrodia elata19.780
SRR5643525five period of Gastrodia elata19.830
SRR5643528five period of Gastrodia elata25.970
SRR5643658five period of Gastrodia elata16.490
SRR5643659five period of Gastrodia elata22.300
SRR5643660five period of Gastrodia elata22.250
SRR5643661five period of Gastrodia elata28.670
SRR5643662five period of Gastrodia elata22.170
SRR5643663five period of Gastrodia elata26.680
SRR5643664five period of Gastrodia elata19.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.990
SRR6049655Rhizomagastrodiae_C368-T10_good_117.750
SRR6049656Rhizomagastrodiae_C368-T07_good_117.010
SRR6049657Rhizomagastrodiae_C368-T07_good_117.700
SRR6049658Rhizomagastrodiae_C368-T04_good_117.160
SRR6049659Rhizomagastrodiae_C368-T04_good_120.050
SRR6049660Rhizomagastrodiae_C368-T01_good_115.920
SRR6049661Rhizomagastrodiae_C368-T04_good_116.260
SRR6049662Rhizomagastrodiae_C368-T01_good_115.020
SRR6049663Rhizomagastrodiae_C368-T01_good_114.570
SRR6049664Rhizomagastrodiae_C368-T10_good_115.360
SRR6049665Rhizomagastrodiae_C368-T10_good_115.360
SRP279888GastroGastrodia elata tuber 19.08
JuvenJuvenile tuber24.82
Mother_GastroMother tuber of Gastrodia elata 55.75
Mother_JuvenMother tuber of Juvenile 61.55