Detail information of GWHGAAEX013404/evm.TU.scaffold_50.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672142810|ref|XP_008795269.1|0PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Phoenix dactylifera]
Swissprottr|A1Y2B7|SGS3_MAIZE0Protein SUPPRESSOR OF GENE SILENCING 3 homolog
trEMBLtr|M0TYJ1|M0TYJ1_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P08320_001}
TAIRAT5G235707.00E-176XS domain-containing protein / XS zinc finger domain-containing protein-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000053183455212484+
Transcript Sequence

Network for GWHGAAEX013404

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03470.13zf-XS2412794.50E-07
PF03468.13XS3124272.50E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0031047Biological Processgene silencing by RNA

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.850
SRR2545915Juvenile tuber34.520
SRP108465SRR5643513five period of Gastrodia elata22.270
SRR5643514five period of Gastrodia elata23.630
SRR5643515five period of Gastrodia elata19.230
SRR5643524five period of Gastrodia elata20.820
SRR5643525five period of Gastrodia elata15.100
SRR5643528five period of Gastrodia elata35.010
SRR5643658five period of Gastrodia elata36.570
SRR5643659five period of Gastrodia elata23.600
SRR5643660five period of Gastrodia elata41.690
SRR5643661five period of Gastrodia elata23.730
SRR5643662five period of Gastrodia elata27.450
SRR5643663five period of Gastrodia elata27.540
SRR5643664five period of Gastrodia elata20.590
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.170
SRR6049655Rhizomagastrodiae_C368-T10_good_127.020
SRR6049656Rhizomagastrodiae_C368-T07_good_137.750
SRR6049657Rhizomagastrodiae_C368-T07_good_131.030
SRR6049658Rhizomagastrodiae_C368-T04_good_120.010
SRR6049659Rhizomagastrodiae_C368-T04_good_119.980
SRR6049660Rhizomagastrodiae_C368-T01_good_127.200
SRR6049661Rhizomagastrodiae_C368-T04_good_122.620
SRR6049662Rhizomagastrodiae_C368-T01_good_138.340
SRR6049663Rhizomagastrodiae_C368-T01_good_128.250
SRR6049664Rhizomagastrodiae_C368-T10_good_138.450
SRR6049665Rhizomagastrodiae_C368-T10_good_138.450
SRP279888GastroGastrodia elata tuber 25.61
JuvenJuvenile tuber50.82
Mother_GastroMother tuber of Gastrodia elata 15.64
Mother_JuvenMother tuber of Juvenile 38.28