Detail information of GWHGAAEX013406/evm.TU.scaffold_50.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|237654602|ref|YP_002890916.1|8.00E-08DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
nrgi|672178851|ref|XP_008809574.1|2.43E-168PREDICTED: uncharacterized protein LOC103721232 isoform X1 [Phoenix dactylifera]
Swissprottr|Q9FLR0|NEN1_ARATH2.00E-135Protein NEN1 {ECO:0000303|PubMed:25081480}
trEMBLtr|I1P6K3|I1P6K3_ORYGL4.00E-168Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0360900.1}
TAIRAT5G077106.00E-135Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000053233272262911+
Transcript Sequence

Network for GWHGAAEX013406

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00929.23RNase_T291944.80E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.140
SRR2545915Juvenile tuber17.540
SRP108465SRR5643513five period of Gastrodia elata11.270
SRR5643514five period of Gastrodia elata13.110
SRR5643515five period of Gastrodia elata11.830
SRR5643524five period of Gastrodia elata12.890
SRR5643525five period of Gastrodia elata9.060
SRR5643528five period of Gastrodia elata16.410
SRR5643658five period of Gastrodia elata22.780
SRR5643659five period of Gastrodia elata8.450
SRR5643660five period of Gastrodia elata12.770
SRR5643661five period of Gastrodia elata10.690
SRR5643662five period of Gastrodia elata7.280
SRR5643663five period of Gastrodia elata7.140
SRR5643664five period of Gastrodia elata6.640
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.450
SRR6049655Rhizomagastrodiae_C368-T10_good_113.600
SRR6049656Rhizomagastrodiae_C368-T07_good_111.810
SRR6049657Rhizomagastrodiae_C368-T07_good_115.690
SRR6049658Rhizomagastrodiae_C368-T04_good_113.100
SRR6049659Rhizomagastrodiae_C368-T04_good_116.470
SRR6049660Rhizomagastrodiae_C368-T01_good_115.070
SRR6049661Rhizomagastrodiae_C368-T04_good_110.770
SRR6049662Rhizomagastrodiae_C368-T01_good_110.060
SRR6049663Rhizomagastrodiae_C368-T01_good_19.560
SRR6049664Rhizomagastrodiae_C368-T10_good_114.760
SRR6049665Rhizomagastrodiae_C368-T10_good_114.760
SRP279888GastroGastrodia elata tuber 8.27
JuvenJuvenile tuber12.04
Mother_GastroMother tuber of Gastrodia elata 10.52
Mother_JuvenMother tuber of Juvenile 8.96