Detail information of GWHGAAEX013409/evm.TU.scaffold_50.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|403507587|ref|YP_006639225.1| | 4.00E-28 | phosphotransferase enzyme family protein [Nocardiopsis alba ATCC BAA-2165] |
| KOG | KOG0192 | 0 | Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs |
| nr | gi|719966253|ref|XP_010258415.1| | 0 | PREDICTED: serine/threonine-protein kinase TNNI3K-like [Nelumbo nucifera] |
| Swissprot | tr|Q2MHE4|HT1_ARATH | 1.00E-45 | Serine/threonine-protein kinase HT1 |
| trEMBL | tr|M1CR37|M1CR37_SOLTU | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400072865} |
| TAIR | AT1G14000 | 0 | VH1-interacting kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 299551 | 330887 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013409
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12796.6 | Ank_2 | 50 | 114 | 1.80E-07 |
| PF07714.16 | Pkinase_Tyr | 178 | 433 | 3.70E-64 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | TKL-Pl-5 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 103.080 |
| SRR2545915 | Juvenile tuber | 63.740 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 45.850 |
| SRR5643514 | five period of Gastrodia elata | 42.540 | |
| SRR5643515 | five period of Gastrodia elata | 46.860 | |
| SRR5643524 | five period of Gastrodia elata | 44.680 | |
| SRR5643525 | five period of Gastrodia elata | 88.130 | |
| SRR5643528 | five period of Gastrodia elata | 87.090 | |
| SRR5643658 | five period of Gastrodia elata | 101.750 | |
| SRR5643659 | five period of Gastrodia elata | 54.620 | |
| SRR5643660 | five period of Gastrodia elata | 59.350 | |
| SRR5643661 | five period of Gastrodia elata | 53.040 | |
| SRR5643662 | five period of Gastrodia elata | 57.490 | |
| SRR5643663 | five period of Gastrodia elata | 58.050 | |
| SRR5643664 | five period of Gastrodia elata | 67.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 45.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 56.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 47.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 43.41 |
| Juven | Juvenile tuber | 50.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.21 | |
| Mother_Juven | Mother tuber of Juvenile | 43.91 |