Gene detail

Detail information of GWHGAAEX013413/evm.TU.scaffold_50.18

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695066344\|ref\|XP_009380060.1\|	0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	2.00E-141	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|B9FB80\|B9FB80_ORYSJ	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEE59818.1}
TAIR	AT4G38180	5.00E-141	FAR1-related sequence 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	399320	401731	+

Transcript Sequence
>GWHTAAEX013413 ATGGAGGGTGCCTCTAGTGAAGACGAGAGCTCTCTTAGGGATAATAATGTTGACTTCAACAATGAGAACATGGAACACCATTTGGCATTGGAGATCAATAGCCATTTCAATGACTCTGAAAGTCTTCTTCCTTCTAATCATGAAGCCTCGGAGAATATGGAACCCTTCATTGGAATGGAGTTTGAATCTGAAGAAGCTGCAAAGGAGTCCTATATGTCATATGCTAGTCGGGTTGGGTTCTCTGTGCGCATTAGCAAGTCCCGCCGCTCAAGGAATGATGAATCCATTATAATGAGACGTTTTGTTTGCTCCAAGGAAGGTTTTCATACGAAGAAAGGAAACTACGAGGATGGCAAGAAGAAGAGAAAACGTGCAACAATTAGGGAAGGTTGCAATGCCATGATTGAAGTTATTCAAAAGTATTATGGGCGCTGGGTTGTAACTAAGCTTGTAAAAGAGCATAATCATATTGTAGCAGCACCTAGTCGTGTAAGGTACATTGCCCCTGAAGAATATGCAGGCATGGAACCATTTATTGGAATGGAGTTTTCGTCTCATGAAGGTGCACAGATGTTTTATTATGCATATGCTAGTCGTATTGGATTCGATGTCCGCATTAGACTTTCACGTCGCTCGACACGAGATGAGTCATTTGTTATGCGTCGCTTTGTATGCACGAAAGAGGGCTTCACCCTGGTCGAGGAGAATTTTGACGAAGGCAAGAAGAAAAGAAGCCGAACTCCCACAAGGGAAGGTTGTAAAGCTATGTTGGAGGTGATAAAAAAGGATTCCGATCGATGGATAGTTTCCAAACTCATCACAGATCATACCCATGACCTTGTTATTGCGCCGGGAAAAGTACATTACATCCAATCACAGAGTGAAGTTGTAGTTCTCGCAAAAAATGGCTCAGTTAATCGTGAGAAACCGGCTGTTCTGGCAAGTGCAAAGTTGCAGGGGTTCGGAGATGCATGTGGAGGCTTGGATAGTCTTTCTTCATATGATTTGGGGCCGAGAACTGATTTGAGGGACAATTGCCAGTGTGATTTTGGGTTTGAGGAGACCCAGTTTTTATTGGAATCTTTGAAGAAGATGCAGGCTGAGAGTCCTGCATTCTTTTATGCTTTCCAAGTCGATAAAAACAATTGCTTAGTAAATGCATTTTGGGCTGATGCCAAAGCTAAGATGGCGTACTATTGTTTTGGAGATGCCGTAACCCTTGATTCATCGTGCATGGATAATAAGAGCATGATGCCATTTGTCATGTTCACCGGCGTTAATCACCACTGTCAGTCGGTAGCCTTTGGGTGTGCCTTGCTGACTGACGAGACGGAGGCGTCATTCATCTGGCTATTTGAAAATTGGCGCATAGCCATGTGTGGACGCCCTCCGATTTCTTTGATAACCGATCATCATGAAGCCATGGCAGCGGCAATCTCAAGTGTTTTCCCGGAGGCCCGTCACCGTCTCAGCCGATGCTATATTTTAAGAAAATGCCGGGAAAAGCTGTCGAATCTGTATAGCACACGTGACAGCACTGAGGCTGGTTTTGAAATGGAATTTTTAAAGTGCGTTGATGAGTCTGAATCTGTTCAAGAGTTCGAGGTGCAGTGGAAGTCTATTATTAAGGATAAATATGGCCTGGGCGAGAACCCCTGGCTCCAGTTTTTGCATGGCATTCGCCACAAATGGGTCCCAATATACCACAAGGACACTTTTGCAGCAGACGTATCATCTTCTGTGGCCGAGAAATCAGAGAGTTTAAGCTTTTTCTTCAAGAAGTACTTTGTCAGAAAGACCCCTCTGCAGGTCTTCATCAGCATCCTTGACCAGGCGATTGCCGTTTGGTATGAAAGAGAGGCGCTTGAGGATTTTGCTTCAACTTTCACCAGATCCACCTTGAAAACCCCATCAAGCATCCTCAAACAGGCGGTTGAAATATACACAAGGACTGTATTCGAAGCCTTTCAGGATGAGTTTCTGGAATCACTGGCCTATTTTGCTGATAAGATTGAAGAAGGGGTGGTCAGCAGATACAGCGTGACGAATGACGAAGATGGCCACAGTTGCATTGTAACCTACAATTCCTCCGATAAGAGGACGGGTTGCAGCTGCTGCAAATTCGAGAGGTCTGGCATTCTATGCAGACATATCTTGAGGGTGTTCTTGACTGTCGACGTGCGCATGCTGCCGGATCACTGCGTCCTGAAAAGGTGGACGAAAGATGCGAAGAACGGTTTCGTGCTGGATGAATGTGCGAGGTATAGCGATCTCGTATGCCATGTCATTCGGTTTGCCAAGGAAGGGTCGACGTCCCCTGATGTCTATAACATTGCCAAACATGCCCTCCAGATGGCATTTGCTGAGGTACTCGCAGCAAAAAAGGATGTTGCCAGTAGATGTTCTCTGTGA

Network for GWHGAAEX013413

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.14	FAR1	71	158	3.50E-29
PF03101.14	FAR1	192	281	1.90E-25
PF10551.8	MULE	405	490	2.30E-20
PF04434.16	SWIM	699	724	4.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	62.170
SRP064423	SRR2545915	Juvenile tuber	46.410
SRP108465	SRR5643513	five period of Gastrodia elata	32.550
	SRR5643514	five period of Gastrodia elata	30.540
	SRR5643515	five period of Gastrodia elata	29.790
	SRR5643524	five period of Gastrodia elata	29.400
	SRR5643525	five period of Gastrodia elata	29.850
	SRR5643528	five period of Gastrodia elata	25.240
	SRR5643658	five period of Gastrodia elata	33.700
	SRR5643659	five period of Gastrodia elata	31.310
	SRR5643660	five period of Gastrodia elata	34.370
	SRR5643661	five period of Gastrodia elata	28.420
	SRR5643662	five period of Gastrodia elata	26.320
	SRR5643663	five period of Gastrodia elata	28.890
	SRR5643664	five period of Gastrodia elata	31.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	35.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	47.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	36.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.960
SRP279888	Gastro	Gastrodia elata tuber	35.26
	Juven	Juvenile tuber	44.37
	Mother_Gastro	Mother tuber of Gastrodia elata	29.23
	Mother_Juven	Mother tuber of Juvenile	27.76