Detail information of GWHGAAEX013414/evm.TU.scaffold_50.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG11900Polypyrimidine tract-binding protein
nrgi|672165344|ref|XP_008802573.1|0PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform X1 [Phoenix dactylifera]
Swissprottr|Q9MAC5|PTBP1_ARATH0Polypyrimidine tract-binding protein homolog 1
trEMBLtr|D7SXE2|D7SXE2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI22239.3}
trEMBLtr|D7SXE2|D7SXE2_VITVI9.00E-23Putative uncharacterized protein {ECO:0000313|EMBL:CBI22239.3}
TAIRAT3G011500polypyrimidine tract-binding protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000053404664438198+
Transcript Sequence

Network for GWHGAAEX013414

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_121709.20E-08
PF13893.5RRM_51011750.00047
PF13893.5RRM_52303254.60E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.740
SRR2545915Juvenile tuber27.360
SRP108465SRR5643513five period of Gastrodia elata17.870
SRR5643514five period of Gastrodia elata15.750
SRR5643515five period of Gastrodia elata16.440
SRR5643524five period of Gastrodia elata19.210
SRR5643525five period of Gastrodia elata16.480
SRR5643528five period of Gastrodia elata11.870
SRR5643658five period of Gastrodia elata15.000
SRR5643659five period of Gastrodia elata17.650
SRR5643660five period of Gastrodia elata19.420
SRR5643661five period of Gastrodia elata15.770
SRR5643662five period of Gastrodia elata16.920
SRR5643663five period of Gastrodia elata18.670
SRR5643664five period of Gastrodia elata18.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.990
SRR6049655Rhizomagastrodiae_C368-T10_good_118.800
SRR6049656Rhizomagastrodiae_C368-T07_good_110.000
SRR6049657Rhizomagastrodiae_C368-T07_good_113.350
SRR6049658Rhizomagastrodiae_C368-T04_good_18.300
SRR6049659Rhizomagastrodiae_C368-T04_good_17.950
SRR6049660Rhizomagastrodiae_C368-T01_good_17.370
SRR6049661Rhizomagastrodiae_C368-T04_good_17.260
SRR6049662Rhizomagastrodiae_C368-T01_good_16.400
SRR6049663Rhizomagastrodiae_C368-T01_good_15.770
SRR6049664Rhizomagastrodiae_C368-T10_good_110.440
SRR6049665Rhizomagastrodiae_C368-T10_good_110.440
SRP279888GastroGastrodia elata tuber 10.42
JuvenJuvenile tuber14.42
Mother_GastroMother tuber of Gastrodia elata 18.00
Mother_JuvenMother tuber of Juvenile 20.45