Detail information of GWHGAAEX013421/evm.TU.scaffold_50.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|158424159|ref|YP_001525451.1|2.00E-4050S ribosomal protein L15 [Azorhizobium caulinodans ORS 571]
KOGKOG08465.00E-112Mitochondrial/chloroplast ribosomal protein L15/L10
nrgi|566152414|ref|XP_002298658.2|4.39E-123hypothetical protein POPTR_0001s33180g [Populus trichocarpa]
Swissprottr|P25873|RK15_ARATH3.00E-1550S ribosomal protein L15, chloroplastic (Precursor)
trEMBLtr|B9GFG1|B9GFG1_POPTR2.00E-123Uncharacterized protein {ECO:0000313|EMBL:EEE83463.2}
TAIRAT5G646705.00E-112Ribosomal protein L18e/L15 superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000053552307569764-
Transcript Sequence

Network for GWHGAAEX013421

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00828.18Ribosomal_L27A952184.70E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02876RP-L15, MRPL15, rplO Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0015934Cellular Componentlarge ribosomal subunit

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.610
SRR2545915Juvenile tuber41.670
SRP108465SRR5643513five period of Gastrodia elata83.250
SRR5643514five period of Gastrodia elata97.670
SRR5643515five period of Gastrodia elata77.440
SRR5643524five period of Gastrodia elata85.290
SRR5643525five period of Gastrodia elata74.370
SRR5643528five period of Gastrodia elata83.090
SRR5643658five period of Gastrodia elata86.900
SRR5643659five period of Gastrodia elata79.550
SRR5643660five period of Gastrodia elata92.240
SRR5643661five period of Gastrodia elata84.220
SRR5643662five period of Gastrodia elata65.530
SRR5643663five period of Gastrodia elata70.750
SRR5643664five period of Gastrodia elata88.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_194.540
SRR6049655Rhizomagastrodiae_C368-T10_good_185.670
SRR6049656Rhizomagastrodiae_C368-T07_good_1108.590
SRR6049657Rhizomagastrodiae_C368-T07_good_1107.530
SRR6049658Rhizomagastrodiae_C368-T04_good_184.520
SRR6049659Rhizomagastrodiae_C368-T04_good_182.140
SRR6049660Rhizomagastrodiae_C368-T01_good_1115.180
SRR6049661Rhizomagastrodiae_C368-T04_good_192.300
SRR6049662Rhizomagastrodiae_C368-T01_good_1102.300
SRR6049663Rhizomagastrodiae_C368-T01_good_1108.550
SRR6049664Rhizomagastrodiae_C368-T10_good_1113.310
SRR6049665Rhizomagastrodiae_C368-T10_good_1113.310
SRP279888GastroGastrodia elata tuber 76.28
JuvenJuvenile tuber111.56
Mother_GastroMother tuber of Gastrodia elata 41.62
Mother_JuvenMother tuber of Juvenile 72.18