Detail information of GWHGAAEX013422/evm.TU.scaffold_50.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|219847608|ref|YP_002462041.1| | 5.00E-35 | chromosome condensation regulator RCC1 [Chloroflexus aggregans DSM 9485] |
| nr | gi|743839726|ref|XP_010937079.1| | 0 | PREDICTED: uncharacterized protein LOC105056557 [Elaeis guineensis] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 3.00E-47 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|W1NGS8|W1NGS8_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERM94419.1} |
| TAIR | AT5G19420 | 0 | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 601190 | 643967 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013422
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00415.17 | RCC1 | 316 | 364 | 3.30E-10 |
| PF00415.17 | RCC1 | 368 | 419 | 7.60E-07 |
| PF00415.17 | RCC1 | 423 | 471 | 2.50E-10 |
| PF00415.17 | RCC1 | 489 | 535 | 5.90E-11 |
| PF00415.17 | RCC1 | 538 | 587 | 4.00E-07 |
| PF00415.17 | RCC1 | 592 | 639 | 4.40E-14 |
| PF01363.20 | FYVE | 643 | 709 | 3.10E-11 |
| PF13713.5 | BRX_N | 890 | 924 | 1.50E-09 |
| PF08381.10 | BRX | 950 | 1004 | 2.50E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.380 |
| SRR2545915 | Juvenile tuber | 0.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.240 |
| SRR5643514 | five period of Gastrodia elata | 1.490 | |
| SRR5643515 | five period of Gastrodia elata | 0.930 | |
| SRR5643524 | five period of Gastrodia elata | 1.010 | |
| SRR5643525 | five period of Gastrodia elata | 0.810 | |
| SRR5643528 | five period of Gastrodia elata | 0.930 | |
| SRR5643658 | five period of Gastrodia elata | 0.780 | |
| SRR5643659 | five period of Gastrodia elata | 0.700 | |
| SRR5643660 | five period of Gastrodia elata | 0.370 | |
| SRR5643661 | five period of Gastrodia elata | 0.840 | |
| SRR5643662 | five period of Gastrodia elata | 0.580 | |
| SRR5643663 | five period of Gastrodia elata | 0.500 | |
| SRR5643664 | five period of Gastrodia elata | 0.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.610 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.410 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.55 |
| Juven | Juvenile tuber | 0.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.64 | |
| Mother_Juven | Mother tuber of Juvenile | 0.67 |