Detail information of GWHGAAEX013427/evm.TU.scaffold_50.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-62 | FOG: PPR repeat |
| nr | gi|672111928|ref|XP_008803169.1| | 1.61E-157 | PREDICTED: pentatricopeptide repeat-containing protein At1g12620-like [Phoenix dactylifera] |
| Swissprot | tr|Q3EDF8|PPR28_ARATH | 7.00E-63 | Pentatricopeptide repeat-containing protein At1g09900 |
| trEMBL | tr|M0SKW5|M0SKW5_MUSAM | 1.00E-125 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P03980_001} |
| TAIR | AT1G09900 | 3.00E-62 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 716871 | 718493 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013427
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module9 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 91 | 136 | 7.10E-10 |
| PF12854.6 | PPR_1 | 155 | 187 | 7.60E-12 |
| PF13041.5 | PPR_2 | 195 | 243 | 5.60E-13 |
| PF13041.5 | PPR_2 | 264 | 313 | 8.70E-12 |
| PF13041.5 | PPR_2 | 337 | 383 | 3.70E-10 |
| PF13041.5 | PPR_2 | 401 | 449 | 3.70E-13 |
| PF01535.19 | PPR | 479 | 501 | 0.5 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.380 |
| SRR2545915 | Juvenile tuber | 4.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.450 |
| SRR5643514 | five period of Gastrodia elata | 10.860 | |
| SRR5643515 | five period of Gastrodia elata | 9.830 | |
| SRR5643524 | five period of Gastrodia elata | 9.910 | |
| SRR5643525 | five period of Gastrodia elata | 9.700 | |
| SRR5643528 | five period of Gastrodia elata | 7.160 | |
| SRR5643658 | five period of Gastrodia elata | 8.280 | |
| SRR5643659 | five period of Gastrodia elata | 8.960 | |
| SRR5643660 | five period of Gastrodia elata | 13.530 | |
| SRR5643661 | five period of Gastrodia elata | 11.650 | |
| SRR5643662 | five period of Gastrodia elata | 11.700 | |
| SRR5643663 | five period of Gastrodia elata | 10.840 | |
| SRR5643664 | five period of Gastrodia elata | 10.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.09 |
| Juven | Juvenile tuber | 34.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.74 | |
| Mother_Juven | Mother tuber of Juvenile | 31.30 |