Detail information of GWHGAAEX013428/evm.TU.scaffold_50.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-114 | FOG: PPR repeat |
| nr | gi|672176884|ref|XP_008808522.1| | 1.16E-174 | PREDICTED: pentatricopeptide repeat-containing protein At3g14580, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9LUD6|PP230_ARATH | 8.00E-115 | Pentatricopeptide repeat-containing protein At3g14580, mitochondrial (Precursor) |
| trEMBL | tr|W1PW37|W1PW37_AMBTC | 2.00E-140 | Uncharacterized protein {ECO:0000313|EMBL:ERN11525.1} |
| trEMBL | tr|W1PW37|W1PW37_AMBTC | 4.00E-17 | Uncharacterized protein {ECO:0000313|EMBL:ERN11525.1} |
| TAIR | AT3G14580 | 3.00E-114 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 720380 | 726502 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013428
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 192 | 222 | 1.80E-07 |
| PF13041.5 | PPR_2 | 235 | 278 | 2.10E-16 |
| PF01535.19 | PPR | 340 | 368 | 0.11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.580 |
| SRR2545915 | Juvenile tuber | 2.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.480 |
| SRR5643514 | five period of Gastrodia elata | 2.130 | |
| SRR5643515 | five period of Gastrodia elata | 2.590 | |
| SRR5643524 | five period of Gastrodia elata | 2.630 | |
| SRR5643525 | five period of Gastrodia elata | 2.240 | |
| SRR5643528 | five period of Gastrodia elata | 1.880 | |
| SRR5643658 | five period of Gastrodia elata | 2.080 | |
| SRR5643659 | five period of Gastrodia elata | 2.690 | |
| SRR5643660 | five period of Gastrodia elata | 3.270 | |
| SRR5643661 | five period of Gastrodia elata | 2.270 | |
| SRR5643662 | five period of Gastrodia elata | 2.800 | |
| SRR5643663 | five period of Gastrodia elata | 3.360 | |
| SRR5643664 | five period of Gastrodia elata | 2.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.030 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.250 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.250 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.34 |
| Juven | Juvenile tuber | 2.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.46 | |
| Mother_Juven | Mother tuber of Juvenile | 2.20 |