Gene detail

Detail information of GWHGAAEX013429/evm.TU.scaffold_50.35

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	2.00E-106	Transcription factor, Myb superfamily
nr	gi\|695044500\|ref\|XP_009410003.1\|	1.36E-112	PREDICTED: myb-related protein 306-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|P81392\|MYB06_ANTMA	3.00E-102	Myb-related protein 306
trEMBL	tr\|F6GT80\|F6GT80_VITVI	7.00E-111	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43089.1}
TAIR	AT3G47600	2.00E-106	myb domain protein 94

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	780482	782321	-

Transcript Sequence
>GWHTAAEX013429 GGGAAACATGGGTTTGTTTCAAACGGACAAAAGAGTGCTCAGTGTCAACGCAGAGATATATGGTTATAGAAACCAAAGCAAACGCCGCTCTCAGCGCACTTTGGAAATCTAACACTAATAACACTAGTAATTATTTACTTGGCAGTAAATTAAGGTGTAATAACACTAATAATAAGAGAGAGAGAGAGAGAGGCTTCACTTTTTCCAAGTGTGCTTCCCAATTCAATGCACGCGTCTTTGTTATTTCCAGAGACCTTAGAGATAGAAACCAGCAATAGATAGATAAGCATATTTGCGGAGGAGCGGAGAGGCGAAAGAGAGAGAAATCGGCTGACTTTTGAGCGCCCCATGAATAAATGCACCTTGCTGTCTTCCTCTGCTCCTGTGCTTCTCTCAAATTTTCAAGTCAGCACGTCTCTTTGTATATAAATAAAGAAATACATATAAGGACTAGAGGAGTGTACTGATCAGACCGGGATTTTGTCTCAGCACTGGTGTTGTCCCTTTTTCCCCTTCTTCTTCTTCCCCCTTCCCTTCTCTTCACTCGAAAAAACAGAGAGTTTTGGAATGGGGAGGCCGCCTTGCTGTGACAAAGTAGGTGTGAAGAAAGGCCCATGGACTCCGGAGGAAGACATCATCCTCGTTTCTTACATACAAGAACATGGACCTGGAAACTGGAGATCTATTCCCACAAACACAGGGCTGTCGAGATGCAGCAAGAGCTGCAGGCTGAGATGGACAAACTATCTCCGTCCTGGAATAAAGCGCGGCGGCTTCACTGACCAGGAGGAGAAGCTCATAATCCACCTCCAAGCGCTGCTGGGCAACAGATGGGCTGCCATAGCTTCCTACCTCCCGGAGAGAACGGACAACGACATAAAGAACCACTGGAACACCCACTTGAAGAAGAAGCTGATGAAGAAGCTGAGCTCCGACGACGCCCTGCTGAATTGCCACCAGCAGATGACCAAGGGGCAGTGGGAGAGGAGGCTGCAGACAGACATAAACATGGCCAAGCAAGCACTCAAAGATGCCCTCTCCATGGAAAACCCCAGCTTTTTCGCTGAGCCTAAGCCTTGTTCCAGCAGCAGCAGCCATGGCTCCAGCACTCGGCCTGCCCCCTCCTCCTCCTATGCTTCCAGCACTGAGAACATTTCCAGGCTTCTCCAGAACTGGATCAGGAAACCGCCCCCAAAGCAGCACTCTGCAGCAGATTCCAGCGACTGCACAACTGATAACATCACTGATAGCAGCAGAATCGAGAGTTTGTTCCAGGAGGAGAGCAAGCCAAGCTTGCAGGACTTCTCCCTGCTTGAGACTTGGCTGCTAGATGAGAACACCATGATGCTCGATATGCCTCTTGATGCATCCGAACAACTCTTTTAGTTGTTTGTTCACTTTTGTATACTGTTTAGCTGCCCGATTTTCTTTGTATGATTTGTAATCGCTGGATCATCGATCAGTCCTCTTCTGCTCAGCTGCAAATCTCACTCGCACGATCTCTCCAGCGCTTGTATATTACCTTTTGCGGATCTGTATTCGTTAAATTGACGTTTCTAATTGAAAAGAAAAGCAAAGTAAAAGGGATTTACTGTTTTGTTCGTGAATCTGATTTGAGGTTTCCTCTGTTGTACTGAAAATGCAATGCAATGAAATAAAATTAAATGGAAAATTGATGTTAGAAGGATTTCTTTGGGATTTT

Network for GWHGAAEX013429

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module12

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	14	61	9.00E-17
PF00249.30	Myb_DNA-binding	67	112	7.50E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.490
SRP064423	SRR2545915	Juvenile tuber	20.720
SRP108465	SRR5643513	five period of Gastrodia elata	33.170
	SRR5643514	five period of Gastrodia elata	16.820
	SRR5643515	five period of Gastrodia elata	23.820
	SRR5643524	five period of Gastrodia elata	17.790
	SRR5643525	five period of Gastrodia elata	11.350
	SRR5643528	five period of Gastrodia elata	5.680
	SRR5643658	five period of Gastrodia elata	5.210
	SRR5643659	five period of Gastrodia elata	12.510
	SRR5643660	five period of Gastrodia elata	4.470
	SRR5643661	five period of Gastrodia elata	9.400
	SRR5643662	five period of Gastrodia elata	9.640
	SRR5643663	five period of Gastrodia elata	7.190
	SRR5643664	five period of Gastrodia elata	19.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.060
SRP279888	Gastro	Gastrodia elata tuber	14.28
	Juven	Juvenile tuber	19.17
	Mother_Gastro	Mother tuber of Gastrodia elata	44.70
	Mother_Juven	Mother tuber of Juvenile	12.84