Detail information of GWHGAAEX013431/evm.TU.scaffold_50.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-169 | FOG: PPR repeat |
| nr | gi|672202241|ref|XP_008778338.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LXF2|PP385_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g15300 |
| trEMBL | tr|W5EE24|W5EE24_WHEAT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_4BS_E3EC59A72.1} |
| TAIR | AT5G15300 | 3.00E-169 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 798847 | 807340 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013431
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 74 | 103 | 0.12 |
| PF01535.19 | PPR | 176 | 205 | 1.90E-06 |
| PF01535.19 | PPR | 207 | 230 | 1.10E-07 |
| PF13041.5 | PPR_2 | 236 | 283 | 2.20E-11 |
| PF13041.5 | PPR_2 | 340 | 387 | 8.40E-09 |
| PF12854.6 | PPR_1 | 409 | 440 | 4.20E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.650 |
| SRR2545915 | Juvenile tuber | 8.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.580 |
| SRR5643514 | five period of Gastrodia elata | 7.260 | |
| SRR5643515 | five period of Gastrodia elata | 6.450 | |
| SRR5643524 | five period of Gastrodia elata | 5.370 | |
| SRR5643525 | five period of Gastrodia elata | 9.750 | |
| SRR5643528 | five period of Gastrodia elata | 8.830 | |
| SRR5643658 | five period of Gastrodia elata | 7.640 | |
| SRR5643659 | five period of Gastrodia elata | 14.580 | |
| SRR5643660 | five period of Gastrodia elata | 13.760 | |
| SRR5643661 | five period of Gastrodia elata | 14.510 | |
| SRR5643662 | five period of Gastrodia elata | 15.060 | |
| SRR5643663 | five period of Gastrodia elata | 16.740 | |
| SRR5643664 | five period of Gastrodia elata | 16.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.22 |
| Juven | Juvenile tuber | 11.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.17 | |
| Mother_Juven | Mother tuber of Juvenile | 5.66 |