Detail information of GWHGAAEX013434/evm.TU.scaffold_50.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 5.00E-79 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|672147634|ref|XP_008797128.1| | 1.60E-109 | PREDICTED: homeobox-leucine zipper protein HOX21 [Phoenix dactylifera] |
| Swissprot | tr|Q8LC03|ATB13_ARATH | 1.00E-79 | Homeobox-leucine zipper protein ATHB-13 |
| trEMBL | tr|M0S1X0|M0S1X0_MUSAM | 6.00E-106 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P21620_001} |
| TAIR | AT1G69780 | 5.00E-79 | Homeobox-leucine zipper protein family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 883308 | 885399 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013434
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 83 | 136 | 8.80E-15 |
| PF02183.17 | HALZ | 138 | 177 | 7.60E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.240 |
| SRR2545915 | Juvenile tuber | 21.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.640 |
| SRR5643514 | five period of Gastrodia elata | 33.210 | |
| SRR5643515 | five period of Gastrodia elata | 22.960 | |
| SRR5643524 | five period of Gastrodia elata | 30.590 | |
| SRR5643525 | five period of Gastrodia elata | 8.040 | |
| SRR5643528 | five period of Gastrodia elata | 6.860 | |
| SRR5643658 | five period of Gastrodia elata | 9.640 | |
| SRR5643659 | five period of Gastrodia elata | 12.390 | |
| SRR5643660 | five period of Gastrodia elata | 10.360 | |
| SRR5643661 | five period of Gastrodia elata | 10.410 | |
| SRR5643662 | five period of Gastrodia elata | 7.300 | |
| SRR5643663 | five period of Gastrodia elata | 6.780 | |
| SRR5643664 | five period of Gastrodia elata | 4.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 34.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.450 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 46.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.77 |
| Juven | Juvenile tuber | 6.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.73 | |
| Mother_Juven | Mother tuber of Juvenile | 1.91 |