Detail information of GWHGAAEX013436/evm.TU.scaffold_50.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336117058|ref|YP_004571825.1| | 3.00E-27 | serine/threonine protein kinase [Microlunatus phosphovorus NM-1] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|720008258|ref|XP_010258572.1| | 0 | PREDICTED: protein kinase 2B, chloroplastic-like isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|O49840|APK2B_ARATH | 0 | Protein kinase 2B, chloroplastic (Precursor) |
| trEMBL | tr|D7TNC2|D7TNC2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI31995.3} |
| TAIR | AT2G02800 | 0 | protein kinase 2B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 932040 | 951680 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013436
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 96 | 371 | 1.10E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-VIIa-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.210 |
| SRR2545915 | Juvenile tuber | 10.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.730 |
| SRR5643514 | five period of Gastrodia elata | 8.620 | |
| SRR5643515 | five period of Gastrodia elata | 6.870 | |
| SRR5643524 | five period of Gastrodia elata | 7.130 | |
| SRR5643525 | five period of Gastrodia elata | 18.180 | |
| SRR5643528 | five period of Gastrodia elata | 15.070 | |
| SRR5643658 | five period of Gastrodia elata | 17.540 | |
| SRR5643659 | five period of Gastrodia elata | 9.940 | |
| SRR5643660 | five period of Gastrodia elata | 7.520 | |
| SRR5643661 | five period of Gastrodia elata | 7.880 | |
| SRR5643662 | five period of Gastrodia elata | 8.780 | |
| SRR5643663 | five period of Gastrodia elata | 9.390 | |
| SRR5643664 | five period of Gastrodia elata | 8.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.15 |
| Juven | Juvenile tuber | 7.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.69 | |
| Mother_Juven | Mother tuber of Juvenile | 5.23 |