Detail information of GWHGAAEX013437/evm.TU.scaffold_50.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|84489200|ref|YP_447432.1| | 2.00E-29 | tRNA pseudouridine synthase A [Methanosphaera stadtmanae DSM 3091] |
| KOG | KOG2554 | 6.00E-79 | Pseudouridylate synthase |
| nr | gi|672182641|ref|XP_008811570.1| | 5.93E-171 | PREDICTED: tRNA pseudouridine(38/39) synthase [Phoenix dactylifera] |
| trEMBL | tr|W5DGB9|W5DGB9_WHEAT | 3.00E-155 | tRNA pseudouridine synthase {ECO:0000256|RuleBase:RU003792} (Fragment) |
| TAIR | HS13775234 | 6.00E-79 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 948167 | 987304 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013437
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01416.19 | PseudoU_synth_1 | 280 | 390 | 1.40E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009451 | Biological Process | RNA modification |
| GO:0001522 | Biological Process | pseudouridine synthesis |
| GO:0009982 | Molecular Function | pseudouridine synthase activity |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.060 |
| SRR2545915 | Juvenile tuber | 15.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.150 |
| SRR5643514 | five period of Gastrodia elata | 8.920 | |
| SRR5643515 | five period of Gastrodia elata | 10.630 | |
| SRR5643524 | five period of Gastrodia elata | 7.710 | |
| SRR5643525 | five period of Gastrodia elata | 9.960 | |
| SRR5643528 | five period of Gastrodia elata | 12.140 | |
| SRR5643658 | five period of Gastrodia elata | 9.180 | |
| SRR5643659 | five period of Gastrodia elata | 13.670 | |
| SRR5643660 | five period of Gastrodia elata | 15.290 | |
| SRR5643661 | five period of Gastrodia elata | 12.500 | |
| SRR5643662 | five period of Gastrodia elata | 13.550 | |
| SRR5643663 | five period of Gastrodia elata | 13.980 | |
| SRR5643664 | five period of Gastrodia elata | 15.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.960 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.41 |
| Juven | Juvenile tuber | 19.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.29 | |
| Mother_Juven | Mother tuber of Juvenile | 13.52 |