Gene detail

Detail information of GWHGAAEX013440/evm.TU.scaffold_50.47

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|333911548\|ref\|YP_004485281.1\|	3.00E-114	small GTP-binding protein [Methanotorris igneus Kol 5]
KOG	KOG1487	0	GTP-binding protein DRG1 (ODN superfamily)
nr	gi\|720084835\|ref\|XP_010243335.1\|	0	PREDICTED: developmentally-regulated G-protein 3 [Nelumbo nucifera]
Swissprot	tr\|Q9SVA6\|DRG3_ARATH	0	Developmentally-regulated G-protein 3
trEMBL	tr\|A0A067KGN3\|A0A067KGN3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP35247.1}
TAIR	AT4G39520	0	GTP-binding protein-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	1057529	1083193	-

Transcript Sequence
>GWHTAAEX013440 ACCACTTTTTTTAATACACCTTGTGCAATTGATGTTTGCAAATAAATTTAAAATGGTAAAATAATAAGAAAAAATATGAAAATACCATTCTCGTAATTTTCTCCGCATAGCCATCAATCGACGGGCTTCTGTTTCTGTCTTCCTTCTTCCGCCTTCCGCCGCCTTCCGCCGACGCCTTCTGCCTTCTGCCGTCTTCCGTCTTCCGTCTTCCTCCGCCGTCTTCCGTCTTCCTCCGCAGGTATTTCGATTGAATCGAATCGAATCGAATCAACAAACAGGTTAACAGGAAACGCGAGAGCTCGGTGCTTCGCTGTTGCCGGTGTCGTAAACGACGCGAGAGCTAGGTGCTTCGCTGTTGTCGGTCTCGCAAACGAAAACATGGCCACCGTTATGCAGAAGATTAAAGATATCGAAGACGAGATGGCAAGGACGCAGAAAAACAAAGCTACTGCTCACCATCTTGGTCTTCTTAAGGCAAAACTTGCAAAGCTACGCCGCGAGCTCTTGGTACCATCATCAAAAGGAGGTGGTGGAGCTGGCGAAGGCTTTGATGTTACTAAAAGTGGGGATGCCCGTGTTGGCCTTGTTGGATTTCCGTCTGTTGGAAAATCAACGCTTCTTAACAAATTAACTGGTACTTTTTCTGAGGTTGCCTCTTATGAATTCACTACCCTAACATGCATTCCTGGTGTAATTGTGTACAGAGGTGCGAAAATCCAGTTGTTAGATCTTCCAGGGATCATTGAAGGCGCAAAGGATGGGAAGGGGAGAGGAAGGCAGGTAATCAGCACTGCCAGAACTTGCAACTGCATTTTGATTGTGCTGGATGCTATCAAGCCAATAACCCACAAGCGTATTATTGAGAAAGAGCTAGAAGGGTTCGGCATAAGGTTGAATAAAGAGCCGCCAAACCTGAGTTTCCGAAAGAAGGATAAGGGCGGTATCAATCTGACATCTACGATTGCTAACACGCACTTGGACCTTGATACCGTGAAGGCGATCTGCGGAGAATACCGGATACACAATGCGGACATCACCCTCCGGTACGATGCGACCGCGGATGATCTCATAGACGTTATTGAAGGAAGCCGAATTTATACGCCTTGCATCTACGTCGTCAACAAGATTGATCAAATTTCGCTCGAGGAGCTCGAGATTCTTGACAGGCTTCCTCACTATTGCCCCATTAGTGCCCATCTGGAGTGGAATCTTGATGGCCTGCTGGAGATGATATGGGAGTACCTCAATCTAACCCGCATTTACACCAAGCCCAAAGGGATGAATCCGGATTACGAGGATCCTGTCATCTTATCCTCTAAGAAACGAACCGTCGAGGATTTCTGCATTAAGATTCACAAGGACATGCTTAAGCAGTTCAAATATGCTTTGGTATGGGGCTCCAGCGTCAAGCACAAGCCTCAGCGAGTTGGAAAGGAACACGAGCTGGAGGATGAAGACGTTGTTCAAATCATAAAGAAGGTATAAGATAAAAGAAGCAGAATTTAGCCGCAGAATCTGCTTGTTGAGTTGAGCCTTTTTTTTTCTTAGGTTTAATAATACAAGTCTTTGTTTTAAATGTTGTTTCTATGACTTGAATTGCTTCTGCCTTAACTTAATTGTTTCATATAAAATCGTTGTATTTATGTAATAATTAGTCAGTTAGGTTGATTAATTATTTTGGGATCAACAGTGGTAAACCATAAGCTCTTTATTATACTTTAATTACAATGAAACAAATGCTCAAAAACAAAAAAGAAGGTGAAGGCATCATCTATCTGTCTATCTACCTATGTAGATACTAATCTGTAAAGAGGAAGAAGAATTCAAGACCAAATACAGCAAATCAAGTAGCTCATACGCTTCTTCCTGCCCTGCGCACATCAACAATAACAGCAACTGTCGCATCAATTATCACAAAATAGTCATAAAGAAAAAGAACCTAGAAAGTACGAACCGAGGTAGGGTGCTCGCGGGGGATCGCCCGAGTTACGGAAGGGCCAGACAGGGAATCGTCGGCTTTGGATCGGCGATGGAGATCGTCATTTTGCTTGTTGGATCCGTGAAGAATGTCCTCTTCGTTTCCGATGGAGATGCTGGAGTAATCGGACTTATTCTGTTTTCTCATCTCTCGGATCTTGGAGAAGTCCAGCGAGTAATCCGGCATCCCCTTCTGCATATCCCAGTCGCCGAAGGCTGGCACTGACATCCAATCCCCCTTCGCCCCCTGCAAATTGATCCATCAAACCCTAATCTACAATTTCTTCCTCCCAAACAAATGGATTCATTCGATTCATCATGCCAAATCGATCGATCGATTGAAAGATGCTAACTGATATAAAGAAATAATCTGAGAGAGGAAATAGAGTGCATACCTCTGTAGCCTTCTTGTCCATTATCAGAGCAGAGAATTTGCGGCGTAGTGATCGAAAGGTAGGGGAGTAGTTATACTGCTCTCGGTATTATATGCCACTGGAATGTTATTTTATTACAATTTCGCCACTCGTAGCCTCCATTGAACTGCACACTCGGTTATTTTTATGCGAACTATGCATTTATAAATTTATTTGTTTCTTAAACCTGCAATCTAGTGGCTTTGGCTGTAGTGTGGTATTGGACGTGCGGCTTGGATGGAAGTCGCAGAGAAATTAATGTGCGGGTATCTCATACATAT

Network for GWHGAAEX013440

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01926.22	MMR_HSR1	66	166	9.60E-21
PF16897.4	MMR_HSR1_Xtn	186	291	1.80E-41
PF02824.20	TGS	293	366	6.00E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005525	Molecular Function	GTP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.000
SRP064423	SRR2545915	Juvenile tuber	25.340
SRP108465	SRR5643513	five period of Gastrodia elata	26.980
	SRR5643514	five period of Gastrodia elata	24.330
	SRR5643515	five period of Gastrodia elata	33.000
	SRR5643524	five period of Gastrodia elata	21.420
	SRR5643525	five period of Gastrodia elata	85.810
	SRR5643528	five period of Gastrodia elata	57.810
	SRR5643658	five period of Gastrodia elata	54.240
	SRR5643659	five period of Gastrodia elata	27.240
	SRR5643660	five period of Gastrodia elata	15.980
	SRR5643661	five period of Gastrodia elata	19.420
	SRR5643662	five period of Gastrodia elata	26.230
	SRR5643663	five period of Gastrodia elata	22.590
	SRR5643664	five period of Gastrodia elata	52.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.710
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.800
SRP279888	Gastro	Gastrodia elata tuber	42.55
	Juven	Juvenile tuber	27.65
	Mother_Gastro	Mother tuber of Gastrodia elata	122.99
	Mother_Juven	Mother tuber of Juvenile	42.06