Detail information of GWHGAAEX013442/evm.TU.scaffold_50.48


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|182412446|ref|YP_001817512.1|1.00E-172class III aminotransferase [Opitutus terrae PB90-1]
KOGKOG14040Alanine-glyoxylate aminotransferase AGT2
nrgi|672115432|ref|XP_008780830.1|0PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Phoenix dactylifera]
Swissprottr|Q940M2|AGT21_ARATH0Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial (Precursor)
trEMBLtr|K4A9D0|K4A9D0_SETIT0Uncharacterized protein {ECO:0000313|EnsemblPlants:Si035486m}
TAIRAT4G396600alanine:glyoxylate aminotransferase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005310883621093475+
Transcript Sequence

Network for GWHGAAEX013442

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00202.20Aminotran_3774722.10E-86
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00827AGXT2 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Pyrimidine metabolismmap00240
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0003824Molecular Functioncatalytic activity
GO:0008483Molecular Functiontransaminase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1575.560
SRR2545915Juvenile tuber168.870
SRP108465SRR5643513five period of Gastrodia elata289.080
SRR5643514five period of Gastrodia elata424.420
SRR5643515five period of Gastrodia elata190.740
SRR5643524five period of Gastrodia elata202.410
SRR5643525five period of Gastrodia elata297.030
SRR5643528five period of Gastrodia elata551.800
SRR5643658five period of Gastrodia elata1311.640
SRR5643659five period of Gastrodia elata17.190
SRR5643660five period of Gastrodia elata14.140
SRR5643661five period of Gastrodia elata11.140
SRR5643662five period of Gastrodia elata10.760
SRR5643663five period of Gastrodia elata20.090
SRR5643664five period of Gastrodia elata22.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1564.310
SRR6049655Rhizomagastrodiae_C368-T10_good_1189.960
SRR6049656Rhizomagastrodiae_C368-T07_good_1303.090
SRR6049657Rhizomagastrodiae_C368-T07_good_11189.630
SRR6049658Rhizomagastrodiae_C368-T04_good_11384.210
SRR6049659Rhizomagastrodiae_C368-T04_good_12000.870
SRR6049660Rhizomagastrodiae_C368-T01_good_1743.140
SRR6049661Rhizomagastrodiae_C368-T04_good_11424.460
SRR6049662Rhizomagastrodiae_C368-T01_good_1217.030
SRR6049663Rhizomagastrodiae_C368-T01_good_1261.230
SRR6049664Rhizomagastrodiae_C368-T10_good_1169.940
SRR6049665Rhizomagastrodiae_C368-T10_good_1169.940
SRP279888GastroGastrodia elata tuber 36.95
JuvenJuvenile tuber174.70
Mother_GastroMother tuber of Gastrodia elata 1,886.87
Mother_JuvenMother tuber of Juvenile 167.10