Gene detail

Detail information of GWHGAAEX013443/evm.TU.scaffold_50.50

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1818	2.00E-65	Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains
nr	gi\|50881450\|gb\|AAT85295.1\|	0	FYVE zinc finger containing protein [Oryza sativa Japonica Group]
Swissprot	tr\|Q9LUM0\|FAB1B_ARATH	4.00E-08	1-phosphatidylinositol-3-phosphate 5-kinase FAB1B
trEMBL	tr\|M0T0R0\|M0T0R0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P22350_001}
TAIR	AT1G61690	2.00E-65	phosphoinositide binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	1096407	1101794	-

Transcript Sequence
>GWHTAAEX013443 ATGTTAGAAAAAGTTGGCTTGCCTCCAAAGCCATCAATGAAAGGAGCCAATTGGGTGATTGATGCTTCACATTGTCAAGGCTGTTCTTGTCAATTCACTTTTTTTGTTCGAAAGCATCACTGTCGAAGATGTGGCGGTATATTTTGCAATTCCTGCACCCAACAAAGGATGGTTTTACGTGGGCAAGGCGAGTCACCGGTAAGGATCTGCGACCCCTGTAAAAAGCTTGAAGTGGCGGCTAGATTTGAGCAGAGATTCGGGCATAGAAATCGTGCTACGAAAGCTAGTTCCAAACAAATACTAAAGACAGAGGATGAACTCCTTGTTGCGATTTTGGGAACTGATGGGAAGCATTTTTTGCCTCCTAAAAAAGAATTACCTGTGCTTTCAGATTCCCATGGAACTGGGAGCAGCGCTGCCCATGCAAGTTCTAGTGTGGTATCAGATAATTCAGCTGTTGAAAGAGATGGTGGAAATTCTGGTGAACTACACAATGATGAAAAAAGCAGTAGCCCAGAGGATTTACGTCAGCAGGCCATGGAAGAGAAGAAAAGGTATAGGATACTGAAGGCAGAAGGCAAGGCTGATGAAGCACTTAAAGCTTTCAAATATGGGAAAGAACTTGAGAGGCAAGCCAGCGCTCAGGCGATTGCAATAAGAAAAAACCGTAAATTGGCTGGAAAAATTTCAAGCATCAGCAGTAGCAGAGTCAGCACTGATAGAATGGATGATGACAATAATGCACCTGGCTGTGACAAGAATGTCACTTCCTTGAAAAATGAGGGAAAGGATGATCTCTTCACTGAGCTTAGGCAATTGGGATGGTCTGATGCTGATCTACATGATACAGGTAAAAAACCTGCCAAACTTAGCGTGGAAGGTGAGTTCTCTGGTCTTCTGGGGGAGACGTTTCAGAAATCAGAAATGAGTAGAAAAAAAACTAGCGTTGATAAGACGCAGGTTATTGCACTCAAGAGGAAGGCTCTATTACTAAAGCGAGAAGGGAAGCTTTGTGAAGCTAAAGAAGAACTGAAGCAGGCTAAGATATTGGAAAAGCAATTAGAAGAACAAGAGTTCTTAGGCGAGGGTTCAGATACAGAGGACGAGCTTTATACTTTGATAGAGAATATGGGTAATAATGATAATCAGGATGATCTAATAATGCTAGAAGAGAATGATGTTAACGCAGGTGCGAACTTTGAACAATTGCTGGGAGCTGTGGATGATTTTTCTATTGATGCGAATTTCGAGGTTACAGAGGATGATATGAATGATCCAGAGCTCGGCAATGCCCTGAGATCGTTTGGTTGGTCAGATGATGAGGAGCATGAGCAAAATGAAGCAGCGGAATCTATTTCTTACGATCGGGAGGCATTGCAAGCCAAAATCCTTGATCTGAAGAAACAGGCACTTAGTCAGAGAAGGGCAGGAAATGTTCCTGATGCAATGAATCTTCTTAAGAAGGCAAAGCTTCTCGAGCAGGACCTTGAAAACATTTGTTTAGAGCCCGGATTATCTCAAAAGACTGCCCGTGATAATCAAAATAGTGCACCTAAAAGTAAGTTGGTGATTCAGAAGGAGCTTCTGGCATTTAAAAAGAATGCCCTTACATTGAAAAGGGAGGGACGTTTAGCTGAGGCAGAAGAGGTGATGAAAAAGGGTAAGGTTCTTGAGGAGCAGTTGGATAAGCTTGAGAATGCTTCAAATAAAACTGCGACTATTCCAGGTGAGAAATGCATGGAGCCTACCTATGCTCACGATGGGGATCTCGGAGCCTTTAACATCAATGTTGACGATGAAACAACAGATGTAACAGAACAAGATATGATTGATCCTACCATATTATCATCTTTGAAGAACTTGGGGTGGCTTGACGATGAATCTGATTCTATAAGAACAAGTATTACAACATCCGAACTGCCAAACAAGCCCGAAAGGGTGCCTGCTACGAATCCTTGGAAATCAGCCCGAAATAAGGCAGACATTCGGAGGGAATTATTAGCTATAAAAAGGAAGGCCCTTTCATTGAGACGCCAAGGAAAGCCTGAGGAAGCTGAAGAAGAATTGGAGAGAGCAAAGGATCTGGAAAAGCGATTGGCCGACCTGGAATCACAAAGTTCTGAATATACAGTTCAACGGGAAACACATAATAGTGTCGTTGAAGAGGTTGGAAGGCTTGCTTCTCCCCATATAGAAACAAATATAATTAATGAGATCTCCAAACCTTCTGAAACGCTACCTGTTTTGGCTTCTGGAGTGCAGGTTCTTGAATCTTATAATAGCTCTAAATTTGAAATAAACTGCACAACTGTGGCTTTACCCGAACCAGACCACAACATTGGAGCAAGCAGAAATGAAACCTCACATAAACTTATCGCAGACAGAACTAATAAGACCAATGATATCAAAGGGGAGATTCTTTCTCATAAGCGAAATGCTGTTGCACTGAAGAAGGAAGGAAAGCTGATTGAGGCGAAAGAGGAACTTAAGAAGGTGAAACTTTTGGAAAAGCGGCTTGAAGAAGACCAGGAAAGCAGTGCAGATGACAAGCTTGCTCCAGCTTTTTCTATTTCTGGAAGTACGTCTAATTTGCCAAAACCGGCTTCTAGTCGTGATGGTTTTAAGCTGCAGCAGGAATCTCTCGCTCACAAGAGAAATGCTTTGAAGCTCAGGCGAGAAGGAAAGATACGAGAGGCGGAGGTTGAGTCTGAAAAGGCCAAAGAATTAGAGAGCCGGTTGGAACGACTCGGCGACTCCCAAGCTTCAAGCGCCAGTGTTACAGAGACCGGTGCAGTTGAGGATCTTCTTGATCCTCAACTCATGTCTGCCCTTAAGTCTATAGGATGGGATGACAAGAATTTAATGCCTAAAACATCCGAGAAACCCCGATCCTCGATTTTGATCAAGGAAGAGGTTTCTGGTCAACCGCAGCTGGACCGGACCCAACTTGAAGAGCAAATAAAGGCTACTAAGCTTCAGGCTCTTCAACTGAGAAGGGCCGGAAAACAAGATGAAGCTCTTGAAGCTCTCAGGTCGGCCAAAAAGCTCAAAAAGAAACTGGATCCTTTGATTTGA

Network for GWHGAAEX013443

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01363.20	FYVE	17	75	5.60E-14

Protein Sequence

>GWHPAAEX013443
MLEKVGLPPKPSMKGANWVIDASHCQGCSCQFTFFVRKHHCRRCGGIFCNSCTQQRMVLRGQGESPVRICDPCKKLEVAARFEQRFGHRNRATKASSKQILKTEDELLVAILGTDGKHFLPPKKELPVLSDSHGTGSSAAHASSSVVSDNSAVERDGGNSGELHNDEKSSSPEDLRQQAMEEKKRYRILKAEGKADEALKAFKYGKELERQASAQAIAIRKNRKLAGKISSISSSRVSTDRMDDDNNAPGCDKNVTSLKNEGKDDLFTELRQLGWSDADLHDTGKKPAKLSVEGEFSGLLGETFQKSEMSRKKTSVDKTQVIALKRKALLLKREGKLCEAKEELKQAKILEKQLEEQEFLGEGSDTEDELYTLIENMGNNDNQDDLIMLEENDVNAGANFEQLLGAVDDFSIDANFEVTEDDMNDPELGNALRSFGWSDDEEHEQNEAAESISYDREALQAKILDLKKQALSQRRAGNVPDAMNLLKKAKLLEQDLENICLEPGLSQKTARDNQNSAPKSKLVIQKELLAFKKNALTLKREGRLAEAEEVMKKGKVLEEQLDKLENASNKTATIPGEKCMEPTYAHDGDLGAFNINVDDETTDVTEQDMIDPTILSSLKNLGWLDDESDSIRTSITTSELPNKPERVPATNPWKSARNKADIRRELLAIKRKALSLRRQGKPEEAEEELERAKDLEKRLADLESQSSEYTVQRETHNSVVEEVGRLASPHIETNIINEISKPSETLPVLASGVQVLESYNSSKFEINCTTVALPEPDHNIGASRNETSHKLIADRTNKTNDIKGEILSHKRNAVALKKEGKLIEAKEELKKVKLLEKRLEEDQESSADDKLAPAFSISGSTSNLPKPASSRDGFKLQQESLAHKRNALKLRREGKIREAEVESEKAKELESRLERLGDSQASSASVTETGAVEDLLDPQLMSALKSIGWDDKNLMPKTSEKPRSSILIKEEVSGQPQLDRTQLEEQIKATKLQALQLRRAGKQDEALEALRSAKKLKKKLDPLI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	150.620
SRP064423	SRR2545915	Juvenile tuber	127.120
SRP108465	SRR5643513	five period of Gastrodia elata	52.110
	SRR5643514	five period of Gastrodia elata	45.210
	SRR5643515	five period of Gastrodia elata	47.710
	SRR5643524	five period of Gastrodia elata	41.720
	SRR5643525	five period of Gastrodia elata	57.260
	SRR5643528	five period of Gastrodia elata	45.330
	SRR5643658	five period of Gastrodia elata	54.820
	SRR5643659	five period of Gastrodia elata	61.160
	SRR5643660	five period of Gastrodia elata	76.970
	SRR5643661	five period of Gastrodia elata	54.080
	SRR5643662	five period of Gastrodia elata	74.170
	SRR5643663	five period of Gastrodia elata	81.380
	SRR5643664	five period of Gastrodia elata	120.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	58.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	57.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.240
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.070
SRP279888	Gastro	Gastrodia elata tuber	64.09
	Juven	Juvenile tuber	68.66
	Mother_Gastro	Mother tuber of Gastrodia elata	39.20
	Mother_Juven	Mother tuber of Juvenile	42.10