Detail information of GWHGAAEX013449/evm.TU.scaffold_50.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0944 | 0 | Ubiquitin-specific protease UBP14 |
| nr | gi|672139694|ref|XP_008793636.1| | 0 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q8L6Y1|UBP14_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 14 |
| trEMBL | tr|A0A067KRW1|A0A067KRW1_JATCU | 0 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
| TAIR | HS4507855 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 1195284 | 1234244 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013449
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02148.18 | zf-UBP | 180 | 253 | 5.70E-16 |
| PF00443.28 | UCH | 308 | 803 | 4.70E-40 |
| PF00627.30 | UBA | 617 | 654 | 0.00017 |
| PF00627.30 | UBA | 679 | 714 | 1.70E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0016579 | Biological Process | protein deubiquitination |
| GO:0036459 | Molecular Function | thiol-dependent ubiquitinyl hydrolase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004843 | Molecular Function | thiol-dependent ubiquitin-specific protease activity |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.930 |
| SRR2545915 | Juvenile tuber | 50.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.380 |
| SRR5643514 | five period of Gastrodia elata | 34.250 | |
| SRR5643515 | five period of Gastrodia elata | 30.130 | |
| SRR5643524 | five period of Gastrodia elata | 33.530 | |
| SRR5643525 | five period of Gastrodia elata | 21.400 | |
| SRR5643528 | five period of Gastrodia elata | 23.190 | |
| SRR5643658 | five period of Gastrodia elata | 21.090 | |
| SRR5643659 | five period of Gastrodia elata | 35.800 | |
| SRR5643660 | five period of Gastrodia elata | 36.930 | |
| SRR5643661 | five period of Gastrodia elata | 35.010 | |
| SRR5643662 | five period of Gastrodia elata | 32.860 | |
| SRR5643663 | five period of Gastrodia elata | 33.530 | |
| SRR5643664 | five period of Gastrodia elata | 35.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 39.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 52.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.630 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.480 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 35.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 46.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 46.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.66 |
| Juven | Juvenile tuber | 39.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.50 | |
| Mother_Juven | Mother tuber of Juvenile | 29.71 |