Gene detail

Detail information of GWHGAAEX013450/evm.TU.scaffold_50.56

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|226226445\|ref\|YP_002760551.1\|	1.00E-66	putative amidase [Gemmatimonas aurantiaca T-27]
KOG	KOG1211	4.00E-167	Amidases
nr	gi\|743841309\|ref\|XP_010937490.1\|	0	PREDICTED: outer envelope protein 64, mitochondrial, partial [Elaeis guineensis]
Swissprot	tr\|F4KCL7\|OE64M_ARATH	0	Outer envelope protein 64, mitochondrial
trEMBL	tr\|M0U0E4\|M0U0E4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P14860_001}
TAIR	AT5G09420_1	4.00E-167	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	1234759	1267127	+

Transcript Sequence
>GWHTAAEX013450 ATGCAAATTACTTTTGCTGCCTTTACCCTTTTCCCTCGGCACCCCTTGCTCTTCCTTGCCGCATCTATAAACCCTAAACCCTATAACCCAAACCATCTGCCATTGATTTGCTGTTTTTCTCACCCGTCAACACTGGAGTTCGCGAAGCCTCCCAATTTCAATGCATCGAGCACGAAGCTCTGGATCATAGCGGGTATCGGCGTCGTCGGCGCCGTGATACTCGCCGAGTCCGCCCGCCGGAAGAGAAAGGGGACGACTGGAAAATTGGCTAACGTTAAGGATTTCGGTGCTTTCGTCGAACGTTTCGAACTCATTCCGGCTCCGCAACCGCCGCCTCCTGCCGCACCCCACCCGCTCTCGGATCTCACCTTCGCCGTTTCCGACAATTTTGATGTTGAGAATTTGGTTTCTGGTTTCGGGAGTCCAGACTGGAAGCGGACACATGAGCCAGCGGGGAAAACAGCTGCGGTGATCTCGCTATTGCTGCAGCGCGGAGCTACTTTGGTCGGGAAGACTGTTATAGCTGAATTGGCTTTTGGTGTTACAGGAGAGAATTTGTATTATGGCACGCCAATAAATCCACAATTATTACCACAAATACCTGGGGGATCTTGCAGTGGTTCCGGTGTAGCAGTTGCTGCTGGTCTCGTTGATTTTGCTCTCGGTACTGACACAGCTGGATGTGTTAGAATTCCTGCTGCATTTTGTGGCATTCTTGGTTATAGACCTTCTCATGGGCTTGTGTCTAATGTTGGAGTTTTGACAAACTCACTGAGTCTTGGTACTGTAGGACTGTTTGCACGAGATCCGTCTATATTCCATCGTGTTGGACACTTGTTGTTGCAAGCGTCGCATATTGTTATTAAGCGGGAAAGGCGCTTTATATTCGCTGATGATTTCTTTCAATATTCTAGGATTCCAAAGCAGAAAACTGTACATGTTATAAGCAAAGCCATTGAAGCTTTATCTGGGTACCTGCCTGTTAAACATATGAATGTTAGCCAGTACATCTCTTCAAATGTGCCAATTTTGAAGGAATTTTTTGAGCCCTCAACAAAACTGCACCAAGGAACGTCAACTCTGCAGGCTCTTTCAGCAATAATGCTTTCACTTCAAAAGTATGAGTTCAAAACAAACTACCAGGATTGGATTGACACAGTCAAGCCCAAACTTGAATTTAACGTTTCAACACGTGTGCTTGCTGGACATAACTCAACATATGACAATATTAAATCTCTGTATAAATCCAGGGCTGAACTTCGAGCTGCAATCAGTAGCCTCCTGAAGGATGATGGAATATTAGTTATTCCAACTATCCCAGATTTTCTTTCAAAGCATGGTTCGAAGAGAAAATTGTCTCCTGAGTTTGAAGATCGATTGTTTATTTTGTTGAGTCTTGCTGGGTTATCGGGTTGTTGCCAGGTTGCCATTCCTCTAGGGAAGCATGAAAGCTATCCCATTTCAATATCATTCATAGCAGCACATGGAGCTGATAAGTTTCTTCTTGATACTGTCTTGGATATGCATTCATCTCTCCAGGAACAAAGTAGCATTGCATCAAACTTGGCTCCCTTACCGGATTTCAATGGGGACATGGATGCCTCGGAATTATTGAAAGAAAAGGGAAATGCAGCATTTAAAGGAAAACAATGGAACAAGGCTGTTAATTTCTACACTGAAGCTATCAAATTGAATGATTCAAATGCAACATATTATTGCAATCGGGCAGCTGCTTTTCTTGAACTGGGGTGTTACCAGCAGGCTGAAGCAGATAGTAATCAAGCCATTTTACTAGATAAAAAGAATGTTAAAGCATATCTAAGAAGAGGAACAGCAAGGGAAATGCTTGTATTTTATAAAGAAGCGGCTCTAGATTTTAAGCACGCTCTTGTTCTTGAGCCGCAAAACAAGGCTGCCCGTGATGCTGAGAAAAGGCTAAGGAAGCTGATGAGCTGA

Network for GWHGAAEX013450

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01425.20	Amidase	117	269	1.60E-42
PF01425.20	Amidase	386	502	1.10E-05
PF13414.5	TPR_11	542	583	6.90E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	86.280
SRP064423	SRR2545915	Juvenile tuber	69.480
SRP108465	SRR5643513	five period of Gastrodia elata	41.200
	SRR5643514	five period of Gastrodia elata	36.040
	SRR5643515	five period of Gastrodia elata	33.370
	SRR5643524	five period of Gastrodia elata	33.780
	SRR5643525	five period of Gastrodia elata	37.860
	SRR5643528	five period of Gastrodia elata	28.760
	SRR5643658	five period of Gastrodia elata	24.990
	SRR5643659	five period of Gastrodia elata	55.720
	SRR5643660	five period of Gastrodia elata	58.200
	SRR5643661	five period of Gastrodia elata	52.300
	SRR5643662	five period of Gastrodia elata	62.350
	SRR5643663	five period of Gastrodia elata	56.760
	SRR5643664	five period of Gastrodia elata	67.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	54.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	71.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	58.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	54.200
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	51.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.860
SRP279888	Gastro	Gastrodia elata tuber	69.40
	Juven	Juvenile tuber	90.33
	Mother_Gastro	Mother tuber of Gastrodia elata	31.61
	Mother_Juven	Mother tuber of Juvenile	54.32