Detail information of GWHGAAEX013451/evm.TU.scaffold_50.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672172762|ref|XP_008806485.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g53360, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9LFI1|PP280_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g53360, mitochondrial (Precursor) |
| trEMBL | tr|Q654C7|Q654C7_ORYSJ | 0 | Putative pentatricopeptide (PPR) repeat-containing protein {ECO:0000313|EMBL:BAD45840.1} |
| TAIR | AT3G53360 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 1269599 | 1272208 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013451
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 117 | 164 | 1.80E-10 |
| PF01535.19 | PPR | 192 | 218 | 1.1 |
| PF01535.19 | PPR | 221 | 248 | 1.30E-05 |
| PF13041.5 | PPR_2 | 321 | 370 | 3.70E-09 |
| PF01535.19 | PPR | 396 | 422 | 0.013 |
| PF01535.19 | PPR | 427 | 455 | 0.011 |
| PF01535.19 | PPR | 500 | 520 | 0.19 |
| PF13041.5 | PPR_2 | 527 | 573 | 5.20E-09 |
| PF01535.19 | PPR | 602 | 625 | 1.1 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.520 |
| SRR2545915 | Juvenile tuber | 0.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.180 |
| SRR5643514 | five period of Gastrodia elata | 0.240 | |
| SRR5643515 | five period of Gastrodia elata | 0.190 | |
| SRR5643524 | five period of Gastrodia elata | 0.290 | |
| SRR5643525 | five period of Gastrodia elata | 0.200 | |
| SRR5643528 | five period of Gastrodia elata | 0.090 | |
| SRR5643658 | five period of Gastrodia elata | 0.090 | |
| SRR5643659 | five period of Gastrodia elata | 0.190 | |
| SRR5643660 | five period of Gastrodia elata | 0.710 | |
| SRR5643661 | five period of Gastrodia elata | 0.430 | |
| SRR5643662 | five period of Gastrodia elata | 0.440 | |
| SRR5643663 | five period of Gastrodia elata | 0.500 | |
| SRR5643664 | five period of Gastrodia elata | 0.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.44 |
| Juven | Juvenile tuber | 0.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.43 | |
| Mother_Juven | Mother tuber of Juvenile | 0.89 |