Gene detail

Detail information of GWHGAAEX013453/evm.TU.scaffold_50.59

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2049	4.00E-116	Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily)
nr	gi\|672110463\|ref\|XP_008795579.1\|	1.89E-143	PREDICTED: pumilio homolog 4-like [Phoenix dactylifera]
Swissprot	tr\|Q9C9R6\|PUM7_ARATH	9.00E-117	Putative pumilio homolog 7, chloroplastic (Precursor)
trEMBL	tr\|A0A068TN57\|A0A068TN57_COFCA	5.00E-129	Coffea canephora
TAIR	AT1G22240	4.00E-116	pumilio 8

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	1330591	1334313	-

Transcript Sequence
>GWHTAAEX013453 CGCCTTTCTCTCTCCTCATCTCTGATCCGTTCAACAATGGTGAAAACGTCCTCCTCTCCACATTTCACGTCCATCTCTAAGATATAATCGACGTTCTCATTTTTGTATTCCTTCCCAATCTTCGACTCTTCATTTGCTAACCTGCTCGGATCAACATTTCCACCAATCCCTTTCGCACTCGCTGCACAGAACTGCGTTACTTTTTGCTAAATCAGAGATGGACAAGCTTTTTGGCGAAATCCCCAACGCTCTTTCTTGCGACGCACCAATAGGAGGAATCTCTGTTACCAGCGATGATCGAAGTAGATACAGTCTGTACTCCGATCCTGGTTTCCGGCATTCTCCTTACATTGCGGGAGGAATCGAGAAATGCCGTCATGGTTATGGACCCAGCATAGGCGCGTTTTGGGAGACACCGCTATCATCCCGCTCGAGCTCAACCTCTCGCACGCCTTCTCCTACAGAGGAAGACGCCCGGCTATGGTTTCCGGAGTTCGATAATCACCGCTTTGCATCTGCGATGACGTTGGAAGAGCTTGAGCTGCTCGAGAAGCTCCGATTTCTACAGATACGAGAAAATAGCCGCTCCGTTTCTGAAAGTATTGTCGCATTGGACCCATCATCGAATCCAGGCTCTGTTCTGCCTAATTTTTTGCCGTTCGATGAGAAGAGAACACTGCCGGCGGTTTATTCTGATGAATGGATCGGTGATCGGAGGCGTTTCTCTTACCCACCTCATTTAAAGTCGAGATGCCCAGATGTTGCTATTGACTCTTTGCTTGTTGATTATCTTCGCTGTGCTGGTAAGCATGTCCATCTCAATCCCTCTACTGAAACGCTCAACTCTGAGAGCATTGTGAAGGGGTTTCATGATAAGCTCCAATGCGGGTTTCCATTCCTTGATACAAGATTTCCAAGGAGTGATGAAGTTTTTGGTTGGGAAGATAGCTTTATCATGCAGGGGAAGGGGAATTCTAATGGGTGTAATGGAAACGAGGTTAGAGATAGGTGGAATACACAAATAAATGGTGTTAATGCGGAGACGTTGAAAGGATTCCAATGGCCCAGTCCTTCTGCTTCTCCGTTTCAAAAGAAGGAGACAGTATACGATCTGGCCAAGGACCAGGATGGCTGTCGTTTCTTACAAAAAATATTTGAGGAAGGGAAGGCTGAAGCAATCGATTTCATATTTTATGGAGTGATTGATCATGTGGTTGAGCTAATGGAGAACCCATTTGGGAATTATCTAATGCAAAAGCTCCTTGAAGTCTGCAGCATCGAGCAGAGGATGAAGATCATCTTTAGGCTGACGGGGAACCCATCTGAACTTATTTGCATCTCCCTAAATACTCATGGGACTAGGGCTGTGCAGAAGCTAATTGAGATTATCAAAACAAGACAAGAGATTTTTATCGTGACTTCTGCTCTAAAAACAGGCTTACTAAAACTCATTAAGGATCCCAACGGCAATCATGTCGTCCAAAAGTGCTTAATAACTCTAAAAGCAGAGGACAATAAGTTCATTTTTGATGCTGCTGCGAAGCACTGTGTTGAAATTGCAACCCATCGAAATGGATGCTGTGTTTTACAATGCTGCATATCTCATTCCATTGGAGATTCCCACACAAAGCTGCTCTTTGAAATTTCTGCAAATGGTCTTTTGCTTGCTCGAGATGCTTTTGGGAATTATGTGGTGCAATATATTCTGGATGTGGAGAACCGGGCAGCAAGCGCAGTTCTTCTATCCCAATTCAGAGGGAACTACGCGGAGCTGTCGATGCAGAAATTCAGCAGCAATGTGGTGGAAAAATGCCTCAAAGTTCTAAGCGAAGATCGGAGGGCTGAGATCATCTCTGAGCTCCTTCGCGGGGAAACCTTCGAGCAATTAATTCAAGACCCCTACGGAAATTACGTCGTCCAGTCTGCCCTCCTCTCCACCAAGGGTTCTCCTGCACACGCTTCTCTTGTTCAGGCCATTCGCCCTCTTGCCCCTAAGCTAAGAACCAATCCATACTGCAGGCGAATTTTCTCCAAAACCCTAAGAAATATTGATCATTGATTAGTTAATTAGTTTTTACTTAAGAGTGCTGCAGATTAAAGTAATTAAAGTGTGTTGTTGTCTGTTTAGGGTCGCTGGGGTTTACTAGGTGACAGCTGCTGCCTATGTTGTGCGCTTTTATATATATATATATATGCATTACAGACCATTAAATAAGCACTGTAGGAAACATGAAATTTATATCTGCTGCTGGTGATGTTACAGTTTGTTGTTTGTGTTCTTGCTAAA

Network for GWHGAAEX013453

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00806.18	PUF	296	325	0.00073
PF00806.18	PUF	328	361	2.30E-09
PF00806.18	PUF	404	437	8.10E-08
PF00806.18	PUF	442	465	9.70E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.170
	SRR5643514	five period of Gastrodia elata	1.720
	SRR5643515	five period of Gastrodia elata	0.730
	SRR5643524	five period of Gastrodia elata	0.870
	SRR5643525	five period of Gastrodia elata	0.130
	SRR5643528	five period of Gastrodia elata	0.030
	SRR5643658	five period of Gastrodia elata	0.080
	SRR5643659	five period of Gastrodia elata	0.060
	SRR5643660	five period of Gastrodia elata	0.030
	SRR5643661	five period of Gastrodia elata	0.060
	SRR5643662	five period of Gastrodia elata	0.180
	SRR5643663	five period of Gastrodia elata	0.140
	SRR5643664	five period of Gastrodia elata	0.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.310
SRP279888	Gastro	Gastrodia elata tuber	0.13
	Juven	Juvenile tuber	1.75
	Mother_Gastro	Mother tuber of Gastrodia elata	0.12
	Mother_Juven	Mother tuber of Juvenile	0.42