Detail information of GWHGAAEX013455/evm.TU.scaffold_50.63
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310819139|ref|YP_003951497.1| | 3.00E-47 | beta-phosphoglucomutase hydrolase [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG2667 | 0 | COPII vesicle protein |
| nr | gi|743849438|ref|XP_010939627.1| | 0 | PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Elaeis guineensis] |
| Swissprot | tr|Q6ZAL2|TPP6_ORYSJ | 1.00E-127 | Probable trehalose-phosphate phosphatase 6 |
| trEMBL | tr|M0REV6|M0REV6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P02790_001} |
| TAIR | AT1G36050 | 0 | Endoplasmic reticulum vesicle transporter protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 1408793 | 1454888 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013455
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02358.15 | Trehalose_PPase | 112 | 322 | 2.60E-68 |
| PF13850.5 | ERGIC_N | 401 | 490 | 1.70E-31 |
| PF07970.11 | COPIIcoated_ERV | 542 | 759 | 1.00E-83 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005992 | Biological Process | trehalose biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.620 |
| SRR2545915 | Juvenile tuber | 15.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.790 |
| SRR5643514 | five period of Gastrodia elata | 21.540 | |
| SRR5643515 | five period of Gastrodia elata | 21.310 | |
| SRR5643524 | five period of Gastrodia elata | 22.610 | |
| SRR5643525 | five period of Gastrodia elata | 18.580 | |
| SRR5643528 | five period of Gastrodia elata | 19.290 | |
| SRR5643658 | five period of Gastrodia elata | 22.860 | |
| SRR5643659 | five period of Gastrodia elata | 14.330 | |
| SRR5643660 | five period of Gastrodia elata | 14.070 | |
| SRR5643661 | five period of Gastrodia elata | 13.820 | |
| SRR5643662 | five period of Gastrodia elata | 13.310 | |
| SRR5643663 | five period of Gastrodia elata | 14.960 | |
| SRR5643664 | five period of Gastrodia elata | 12.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.010 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.380 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.070 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.20 |
| Juven | Juvenile tuber | 20.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.90 | |
| Mother_Juven | Mother tuber of Juvenile | 22.87 |