Detail information of GWHGAAEX013462/evm.TU.scaffold_50.71


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG12673.00E-47Mitochondrial transcription termination factor, mTERF
nrgi|672168958|ref|XP_008804497.1|8.39E-85PREDICTED: uncharacterized protein LOC103717770 [Phoenix dactylifera]
trEMBLtr|A2YAV5|A2YAV5_ORYSI8.00E-72Putative uncharacterized protein {ECO:0000313|EMBL:EAZ00216.1}
TAIRAT1G211503.00E-47Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005315769891587290-
Transcript Sequence

Network for GWHGAAEX013462

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02536.13mTERF972431.80E-18
PF02536.13mTERF2633616.90E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilymTERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003690Molecular Functiondouble-stranded DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.180
SRR2545915Juvenile tuber13.770
SRP108465SRR5643513five period of Gastrodia elata9.530
SRR5643514five period of Gastrodia elata7.630
SRR5643515five period of Gastrodia elata14.000
SRR5643524five period of Gastrodia elata7.850
SRR5643525five period of Gastrodia elata13.130
SRR5643528five period of Gastrodia elata10.390
SRR5643658five period of Gastrodia elata9.450
SRR5643659five period of Gastrodia elata10.260
SRR5643660five period of Gastrodia elata9.410
SRR5643661five period of Gastrodia elata10.260
SRR5643662five period of Gastrodia elata13.870
SRR5643663five period of Gastrodia elata11.450
SRR5643664five period of Gastrodia elata16.490
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.930
SRR6049655Rhizomagastrodiae_C368-T10_good_112.490
SRR6049656Rhizomagastrodiae_C368-T07_good_113.970
SRR6049657Rhizomagastrodiae_C368-T07_good_113.670
SRR6049658Rhizomagastrodiae_C368-T04_good_115.510
SRR6049659Rhizomagastrodiae_C368-T04_good_116.560
SRR6049660Rhizomagastrodiae_C368-T01_good_118.590
SRR6049661Rhizomagastrodiae_C368-T04_good_117.090
SRR6049662Rhizomagastrodiae_C368-T01_good_117.450
SRR6049663Rhizomagastrodiae_C368-T01_good_125.120
SRR6049664Rhizomagastrodiae_C368-T10_good_111.880
SRR6049665Rhizomagastrodiae_C368-T10_good_111.880
SRP279888GastroGastrodia elata tuber 10.72
JuvenJuvenile tuber4.81
Mother_GastroMother tuber of Gastrodia elata 10.58
Mother_JuvenMother tuber of Juvenile 3.46