Detail information of GWHGAAEX013464/evm.TU.scaffold_50.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672178741|ref|XP_008809514.1|0PREDICTED: CRS2-associated factor 1, mitochondrial isoform X1 [Phoenix dactylifera]
Swissprottr|Q6Z4U2|CAF1M_ORYSJ6.00E-167CRS2-associated factor 1, mitochondrial (Precursor)
trEMBLtr|C5YHV4|C5YHV4_SORBI9.00E-178Putative uncharacterized protein Sb07g004760 {ECO:0000313|EMBL:EES13435.1}
TAIRAT4G310102.00E-135RNA-binding CRS1 / YhbY (CRM) domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005316139411628502-
Transcript Sequence

Network for GWHGAAEX013464

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01985.20CRS1_YhbY1602441.20E-23
PF01985.20CRS1_YhbY2793623.80E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.450
SRR2545915Juvenile tuber9.440
SRP108465SRR5643513five period of Gastrodia elata8.770
SRR5643514five period of Gastrodia elata7.490
SRR5643515five period of Gastrodia elata5.570
SRR5643524five period of Gastrodia elata7.130
SRR5643525five period of Gastrodia elata7.670
SRR5643528five period of Gastrodia elata5.400
SRR5643658five period of Gastrodia elata3.510
SRR5643659five period of Gastrodia elata6.430
SRR5643660five period of Gastrodia elata7.960
SRR5643661five period of Gastrodia elata6.250
SRR5643662five period of Gastrodia elata6.290
SRR5643663five period of Gastrodia elata6.520
SRR5643664five period of Gastrodia elata6.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.060
SRR6049655Rhizomagastrodiae_C368-T10_good_18.830
SRR6049656Rhizomagastrodiae_C368-T07_good_110.090
SRR6049657Rhizomagastrodiae_C368-T07_good_110.450
SRR6049658Rhizomagastrodiae_C368-T04_good_18.950
SRR6049659Rhizomagastrodiae_C368-T04_good_110.050
SRR6049660Rhizomagastrodiae_C368-T01_good_112.090
SRR6049661Rhizomagastrodiae_C368-T04_good_111.070
SRR6049662Rhizomagastrodiae_C368-T01_good_111.830
SRR6049663Rhizomagastrodiae_C368-T01_good_112.230
SRR6049664Rhizomagastrodiae_C368-T10_good_110.540
SRR6049665Rhizomagastrodiae_C368-T10_good_110.540
SRP279888GastroGastrodia elata tuber 13.39
JuvenJuvenile tuber18.04
Mother_GastroMother tuber of Gastrodia elata 6.43
Mother_JuvenMother tuber of Juvenile 8.81