Detail information of GWHGAAEX013466/evm.TU.scaffold_50.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332982588|ref|YP_004464029.1| | 1.00E-150 | glycoside hydrolase [Mahella australiensis 50-1 BON] |
| nr | gi|695031336|ref|XP_009403180.1| | 0 | PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|A5JTQ3|XYL2_MEDSV | 0 | Alpha-L-arabinofuranosidase (Precursor) |
| trEMBL | tr|A0A061E998|A0A061E998_THECC | 0 | Beta-D-xylosidase 4 {ECO:0000313|EMBL:EOX98858.1} |
| TAIR | AT5G64570 | 0 | beta-D-xylosidase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 1646572 | 1657044 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013466
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00933.20 | Glyco_hydro_3 | 112 | 351 | 1.10E-35 |
| PF01915.21 | Glyco_hydro_3_C | 398 | 632 | 4.50E-52 |
| PF14310.5 | Fn3-like | 700 | 759 | 5.00E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15920 | XYL4 | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.340 |
| SRR2545915 | Juvenile tuber | 6.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.640 |
| SRR5643514 | five period of Gastrodia elata | 11.040 | |
| SRR5643515 | five period of Gastrodia elata | 10.810 | |
| SRR5643524 | five period of Gastrodia elata | 10.490 | |
| SRR5643525 | five period of Gastrodia elata | 14.540 | |
| SRR5643528 | five period of Gastrodia elata | 9.330 | |
| SRR5643658 | five period of Gastrodia elata | 14.320 | |
| SRR5643659 | five period of Gastrodia elata | 3.960 | |
| SRR5643660 | five period of Gastrodia elata | 6.310 | |
| SRR5643661 | five period of Gastrodia elata | 5.440 | |
| SRR5643662 | five period of Gastrodia elata | 6.100 | |
| SRR5643663 | five period of Gastrodia elata | 5.860 | |
| SRR5643664 | five period of Gastrodia elata | 4.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.12 |
| Juven | Juvenile tuber | 9.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.04 | |
| Mother_Juven | Mother tuber of Juvenile | 8.10 |