Detail information of GWHGAAEX013468/evm.TU.scaffold_50.77
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332982588|ref|YP_004464029.1| | 6.00E-72 | glycoside hydrolase [Mahella australiensis 50-1 BON] |
| nr | gi|672108320|ref|XP_008784548.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: beta-xylosidase/alpha-L-arabinofuranosidase 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FLG1|BXL4_ARATH | 0 | Beta-D-xylosidase 4 (Precursor) |
| trEMBL | tr|C5Y8Y2|C5Y8Y2_SORBI | 0 | Putative uncharacterized protein Sb06g030270 {ECO:0000313|EMBL:EES12947.1} |
| trEMBL | tr|C5Y8Y2|C5Y8Y2_SORBI | 2.00E-18 | Putative uncharacterized protein Sb06g030270 {ECO:0000313|EMBL:EES12947.1} |
| TAIR | AT5G64570 | 0 | beta-D-xylosidase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 1666789 | 1682912 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013468
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01915.21 | Glyco_hydro_3_C | 294 | 528 | 2.30E-55 |
| PF14310.5 | Fn3-like | 588 | 655 | 4.30E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15920 | XYL4 | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.410 |
| SRR2545915 | Juvenile tuber | 0.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.390 |
| SRR5643514 | five period of Gastrodia elata | 1.080 | |
| SRR5643515 | five period of Gastrodia elata | 0.950 | |
| SRR5643524 | five period of Gastrodia elata | 0.910 | |
| SRR5643525 | five period of Gastrodia elata | 0.370 | |
| SRR5643528 | five period of Gastrodia elata | 0.530 | |
| SRR5643658 | five period of Gastrodia elata | 0.450 | |
| SRR5643659 | five period of Gastrodia elata | 0.170 | |
| SRR5643660 | five period of Gastrodia elata | 0.350 | |
| SRR5643661 | five period of Gastrodia elata | 0.320 | |
| SRR5643662 | five period of Gastrodia elata | 0.380 | |
| SRR5643663 | five period of Gastrodia elata | 0.260 | |
| SRR5643664 | five period of Gastrodia elata | 0.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.560 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.85 |
| Juven | Juvenile tuber | 0.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.89 | |
| Mother_Juven | Mother tuber of Juvenile | 0.74 |