Detail information of GWHGAAEX013469/evm.TU.scaffold_50.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332982588|ref|YP_004464029.1| | 2.00E-150 | glycoside hydrolase [Mahella australiensis 50-1 BON] |
| nr | gi|672108320|ref|XP_008784548.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: beta-xylosidase/alpha-L-arabinofuranosidase 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q9FLG1|BXL4_ARATH | 0 | Beta-D-xylosidase 4 (Precursor) |
| trEMBL | tr|F6I6R4|F6I6R4_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB62632.1} |
| TAIR | AT5G64570 | 0 | beta-D-xylosidase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 1683139 | 1688112 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013469
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00933.20 | Glyco_hydro_3 | 111 | 350 | 3.50E-34 |
| PF01915.21 | Glyco_hydro_3_C | 397 | 631 | 1.30E-53 |
| PF14310.5 | Fn3-like | 691 | 758 | 1.30E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH3 |
| Carbohydrate-Active enzymes Family | GH3 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15920 | XYL4 | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.340 |
| SRR2545915 | Juvenile tuber | 14.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 51.360 |
| SRR5643514 | five period of Gastrodia elata | 37.890 | |
| SRR5643515 | five period of Gastrodia elata | 20.140 | |
| SRR5643524 | five period of Gastrodia elata | 42.040 | |
| SRR5643525 | five period of Gastrodia elata | 170.680 | |
| SRR5643528 | five period of Gastrodia elata | 100.580 | |
| SRR5643658 | five period of Gastrodia elata | 223.890 | |
| SRR5643659 | five period of Gastrodia elata | 3.790 | |
| SRR5643660 | five period of Gastrodia elata | 1.510 | |
| SRR5643661 | five period of Gastrodia elata | 3.450 | |
| SRR5643662 | five period of Gastrodia elata | 3.900 | |
| SRR5643663 | five period of Gastrodia elata | 6.060 | |
| SRR5643664 | five period of Gastrodia elata | 3.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 66.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 91.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 107.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 43.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 48.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 49.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 132.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 132.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.51 |
| Juven | Juvenile tuber | 8.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.85 | |
| Mother_Juven | Mother tuber of Juvenile | 17.53 |