Detail information of GWHGAAEX013477/evm.TU.scaffold_50.86


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28212.00E-40RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin A
nrgi|695057218|ref|XP_009416869.1|2.25E-88PREDICTED: transcription elongation factor B polypeptide 3 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0TYR1|M0TYR1_MUSAM8.00E-89Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P09020_001}
TAIRAT2G427802.00E-40Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005317745351794309-
Transcript Sequence

Network for GWHGAAEX013477

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06881.10Elongin_A231331.10E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0070449Cellular Componentelongin complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms56.710
SRR2545915Juvenile tuber58.910
SRP108465SRR5643513five period of Gastrodia elata65.700
SRR5643514five period of Gastrodia elata72.470
SRR5643515five period of Gastrodia elata69.900
SRR5643524five period of Gastrodia elata76.250
SRR5643525five period of Gastrodia elata94.470
SRR5643528five period of Gastrodia elata87.850
SRR5643658five period of Gastrodia elata87.660
SRR5643659five period of Gastrodia elata57.210
SRR5643660five period of Gastrodia elata55.850
SRR5643661five period of Gastrodia elata48.650
SRR5643662five period of Gastrodia elata51.920
SRR5643663five period of Gastrodia elata53.380
SRR5643664five period of Gastrodia elata45.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_140.930
SRR6049655Rhizomagastrodiae_C368-T10_good_141.100
SRR6049656Rhizomagastrodiae_C368-T07_good_146.660
SRR6049657Rhizomagastrodiae_C368-T07_good_137.340
SRR6049658Rhizomagastrodiae_C368-T04_good_143.270
SRR6049659Rhizomagastrodiae_C368-T04_good_136.190
SRR6049660Rhizomagastrodiae_C368-T01_good_138.790
SRR6049661Rhizomagastrodiae_C368-T04_good_139.000
SRR6049662Rhizomagastrodiae_C368-T01_good_146.540
SRR6049663Rhizomagastrodiae_C368-T01_good_144.200
SRR6049664Rhizomagastrodiae_C368-T10_good_164.350
SRR6049665Rhizomagastrodiae_C368-T10_good_164.350
SRP279888GastroGastrodia elata tuber 47.76
JuvenJuvenile tuber47.03
Mother_GastroMother tuber of Gastrodia elata 48.90
Mother_JuvenMother tuber of Juvenile 43.35