Gene detail

Detail information of GWHGAAEX013478/evm.TU.scaffold_50.87

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|330469195\|ref\|YP_004406938.1\|	4.00E-06	methyltransferase [Verrucosispora maris AB-18-032]
nr	gi\|672117319\|ref\|XP_008781841.1\|	0	PREDICTED: probable methyltransferase PMT2 [Phoenix dactylifera]
Swissprot	tr\|B9DFI7\|PMT2_ARATH	0	Probable methyltransferase PMT2
trEMBL	tr\|M0RJF6\|M0RJF6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P18810_001}
TAIR	AT1G26850	0	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000053	1813799	1848150	-

Transcript Sequence
>GWHTAAEX013478 ACTACTGATGGTGGATATTTTTGGTCCACCGACGCATTCTATTTCCGTACTTCCATCTACCTTAAGGCTGGAGAGAAAAAAAGACAATTATTTTCTATTAGAAATTAGGCATTTTTACCGCATTCGCGAACGTCGCTGAGATCTGGAGGAGTTTGTGTAGATCTGATCAACTTGCCTATGGATTAGCTCTTGCGAATTCATAAGTTTCCCAGCTCTTCAGCTTCGGATATTTACCCCCCTTTCTGTTCCAATCAAATTTTTGGGCATAGATGCATTATGGCTATCAAAGGAATTGCTACTGACAACAAAACTCGTAATTCTGTATCTATAATTGTTGTTGTTGGTCTGTGTTGCTTCTTCTACCTACTGGGTGCATGGCAAAGGAGTGGTTTTGGAAAGGGAGACAGCATTGCTGTAGAGATTACAAAACAAACAGACTGCAGCAGCACTTCTAATCTCAGTTTTGAAACCCATCACAATGGTGGTGGCGTTTCTGATGAGCTTTCAGATTCTAAATCACCAATTTTTGAGCCTTGTGATGATAGTTATACTGATTATACTCCTTGTCAAGATCAAAAGAGGGCTATGACCTTTCCTAGAAACAACATGATCTACAGAGAAAGGCACTGTCCTCCTGATAAAGAGAAGTTGTATTGTCTAATTCCAGCTCCTAAAGGATATGTTGCCCCATTTCCATGGCCAAAGAGTCGAGATTATGTTCCATATGCGAATGTTCCATATAAAAGCTTGACTGTTGAGAAGGCTGTCCAGAATTGGGTTCAATATGAAGGCAATGTCTTTAGATTCCCTGGTGGAGGAACACAGTTTCCTCAAGGTGCTGATAAATATATTGATCAATTGGCTTCTGTTATCCCAATAGCTAATGGAACTGTCAGAACAGCATTGGACACTGGTTGTGGGGTTGCAAGTTGGGGTGCTTATTTGTTGAAAAGGAATGTGCTGGCCATGTCTTTTGCTCCGAGGGATTCACATGAAGCACAAGTGCAATTTGCACTAGAGAGAGGAGTGCCAGCAGTCATTGGTGTTCTTGGAAGCATAAAACTTCCCTACCCATCCAGAGCCTTTGATATGGCACACTGTTCGAGATGCTTAATTCCATGGGGAGCAAATGATGGAATGTACATGATGGAGGTTGATCGTGTTCTTAGACCAGGCGGATATTGGGTACTTTCTGGCCCACCCATTAACTGGAAAACAAATTTCCAGGCTTGGCAGAGGACTAAGGAGGATCTTGAACAAGAGCAGAAAAGGATTGAAGAAATTGCTGAACTACTTTGTTGGGAGAAGTATGCAGAAGTTGGAGAAATTGCCATATGGAAGAAGAAAATAAATGTTGATTCTTGTCCAGGAAGACAAGATGAATCAGTCATCAAAATATGTGAAACAGTAAATGATGATGTCTGGTACAAAAACATGGAGGATTGTGTCTCTCCTTATCCTGAAGTTAATAATGCTGATGAGGTTGCTGGAGGTGAATTGAAAACATTTCCAGAAAGGTTGTTTGCTGTGCCTCCCAGAATATCCAGTGGTTCTGTAGAAGGAAACTCTGTTGAATCATACCAAGAAGACAACAAAATCTGGAAGAAACATGTCATGGTTTACAAGAAAATCAACAGGTTACTTGATACCGGAAGGTACCGCAATATAATGGACATGAATGCAGGTTTAGGAAGCTTCGCTGCAGTGATTGAATCTTCCAAATTGTGGGTTATGAATGTTGTACCAACAATCGCTGATAGATCTACACTAGGTGTTATATATGAGCGTGGATTGATAGGCATTTATCATGACTGGTGTGAAGCCTTCTCCACTTACCCAAGGACATATGATTTAATCCATGCTAATGGTGTGTTCAGCCTGTACAAGGATAAGTGCAAGATGGAAGACATTCTTCTTGAAATGGATAGGATACTAAGGCCGGAAGGTGCGGTTATTTTCCGAGATGAGGTTGATGTGCTGATAAAGGTGAAGAAGATGATCAATGGCATGAGATGGAGCTCTAAGCTGGCCGATCATGAGGACGGCCCTCTTGTGCCGGAGAAGATACTTGTTGCAGTGAAGCAGTATTGGGTAGCTGGAGGAAAGAACATCACAGCTGAAGTATGATTGTGACTCAGACAATTTGCTAAGGATTTATGTTAGTTATCCTTCTGAATTCTCTAACAACTTGAACCAGATGGGCCTTAATTCTCTAACAATTATGCTTGCTCCATCTTGGTGCTTGATGAGATTTTCAGGTTTAGAAACAGTGGGATTGATAGAGAAATCATTTATTGGGGTCAGATTTAAGTTATTTCAGCTGATTTTGTTTAAGGTAAGCAATAGGAATCATGCCAACCTTGTTTTGATTAATGTTTTTTTAATGCAATATAGTTATGTATTTTATCATTAAAAATTTGCCCTTTGGAATTTCC

Network for GWHGAAEX013478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03141.15	Methyltransf_29	93	602	2.20E-229

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008168	Molecular Function	methyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	89.920
SRP064423	SRR2545915	Juvenile tuber	86.380
SRP108465	SRR5643513	five period of Gastrodia elata	91.390
	SRR5643514	five period of Gastrodia elata	78.220
	SRR5643515	five period of Gastrodia elata	86.580
	SRR5643524	five period of Gastrodia elata	93.290
	SRR5643525	five period of Gastrodia elata	72.660
	SRR5643528	five period of Gastrodia elata	73.110
	SRR5643658	five period of Gastrodia elata	58.660
	SRR5643659	five period of Gastrodia elata	103.920
	SRR5643660	five period of Gastrodia elata	96.410
	SRR5643661	five period of Gastrodia elata	94.930
	SRR5643662	five period of Gastrodia elata	73.650
	SRR5643663	five period of Gastrodia elata	92.130
	SRR5643664	five period of Gastrodia elata	58.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	61.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	38.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	72.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	63.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	58.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	65.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	73.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	68.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	89.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	73.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	71.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	71.650
SRP279888	Gastro	Gastrodia elata tuber	61.05
	Juven	Juvenile tuber	55.39
	Mother_Gastro	Mother tuber of Gastrodia elata	70.44
	Mother_Juven	Mother tuber of Juvenile	52.13