Detail information of GWHGAAEX013486/evm.TU.scaffold_50.97


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16092.00E-87Protein involved in mRNA turnover and stability
nrgi|672171854|ref|XP_008806003.1|6.95E-126PREDICTED: uncharacterized protein LOC103718803 isoform X1 [Phoenix dactylifera]
Swissprottr|F4JKK0|SUD1_ARATH2.00E-09Probable E3 ubiquitin ligase SUD1
trEMBLtr|A0A096UR76|A0A096UR76_WHEAT2.00E-123Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_4BS_FD8CE338C.2}
TAIRAT3G475502.00E-87RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005320071222011462-
Transcript Sequence

Network for GWHGAAEX013486

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.6RINGv41862.90E-12
PF12428.7DUF3675922092.00E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms97.190
SRR2545915Juvenile tuber134.650
SRP108465SRR5643513five period of Gastrodia elata87.690
SRR5643514five period of Gastrodia elata89.490
SRR5643515five period of Gastrodia elata158.300
SRR5643524five period of Gastrodia elata110.080
SRR5643525five period of Gastrodia elata203.020
SRR5643528five period of Gastrodia elata362.560
SRR5643658five period of Gastrodia elata208.990
SRR5643659five period of Gastrodia elata169.090
SRR5643660five period of Gastrodia elata109.660
SRR5643661five period of Gastrodia elata144.120
SRR5643662five period of Gastrodia elata174.030
SRR5643663five period of Gastrodia elata116.060
SRR5643664five period of Gastrodia elata243.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1131.010
SRR6049655Rhizomagastrodiae_C368-T10_good_1118.500
SRR6049656Rhizomagastrodiae_C368-T07_good_1127.790
SRR6049657Rhizomagastrodiae_C368-T07_good_1115.120
SRR6049658Rhizomagastrodiae_C368-T04_good_197.720
SRR6049659Rhizomagastrodiae_C368-T04_good_1109.110
SRR6049660Rhizomagastrodiae_C368-T01_good_1184.240
SRR6049661Rhizomagastrodiae_C368-T04_good_195.790
SRR6049662Rhizomagastrodiae_C368-T01_good_1110.960
SRR6049663Rhizomagastrodiae_C368-T01_good_1187.840
SRR6049664Rhizomagastrodiae_C368-T10_good_1128.140
SRR6049665Rhizomagastrodiae_C368-T10_good_1128.140
SRP279888GastroGastrodia elata tuber 100.58
JuvenJuvenile tuber84.21
Mother_GastroMother tuber of Gastrodia elata 656.77
Mother_JuvenMother tuber of Juvenile 639.51