Detail information of GWHGAAEX013490/evm.TU.scaffold_50.100
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392375599|ref|YP_003207432.1| | 6.00E-99 | glycogen synthase [Candidatus Methylomirabilis oxyfera] |
| nr | gi|672165377|ref|XP_008802589.1| | 0 | PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic-like [Phoenix dactylifera] |
| Swissprot | tr|Q43847|SSY2_SOLTU | 0 | Granule-bound starch synthase 2, chloroplastic/amyloplastic (Precursor) |
| trEMBL | tr|M0SMN9|M0SMN9_MUSAM | 0 | Starch synthase, chloroplastic/amyloplastic {ECO:0000256|RuleBase:RU361232} |
| TAIR | AT3G01180 | 0 | starch synthase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000053 | 2086395 | 2107907 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX013490
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08323.10 | Glyco_transf_5 | 207 | 449 | 2.70E-63 |
| PF13692.5 | Glyco_trans_1_4 | 512 | 655 | 9.00E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT5 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00703 | glgA | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 | ||
| Biofilm formation - Escherichia coli | map02026 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004373 | Molecular Function | glycogen (starch) synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.340 |
| SRR2545915 | Juvenile tuber | 69.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 70.360 |
| SRR5643514 | five period of Gastrodia elata | 50.450 | |
| SRR5643515 | five period of Gastrodia elata | 67.650 | |
| SRR5643524 | five period of Gastrodia elata | 56.570 | |
| SRR5643525 | five period of Gastrodia elata | 33.790 | |
| SRR5643528 | five period of Gastrodia elata | 28.710 | |
| SRR5643658 | five period of Gastrodia elata | 32.640 | |
| SRR5643659 | five period of Gastrodia elata | 69.030 | |
| SRR5643660 | five period of Gastrodia elata | 59.730 | |
| SRR5643661 | five period of Gastrodia elata | 68.360 | |
| SRR5643662 | five period of Gastrodia elata | 56.180 | |
| SRR5643663 | five period of Gastrodia elata | 61.790 | |
| SRR5643664 | five period of Gastrodia elata | 55.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 73.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 44.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 71.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 48.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 44.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 43.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 51.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 59.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 51.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 76.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 76.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 64.40 |
| Juven | Juvenile tuber | 33.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.64 | |
| Mother_Juven | Mother tuber of Juvenile | 21.59 |